Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3221 and Shewana3_3222 are separated by 293 nucleotides Shewana3_3222 and Shewana3_3223 are separated by 396 nucleotides Shewana3_3223 and Shewana3_3224 are separated by 105 nucleotides
Shewana3_3221: Shewana3_3221 - uracil-DNA glycosylase (RefSeq), at 3,863,883 to 3,864,548
_3221
Shewana3_3222: Shewana3_3222 - hypothetical protein (RefSeq), at 3,864,842 to 3,865,276
_3222
Shewana3_3223: Shewana3_3223 - hypothetical protein (RefSeq), at 3,865,673 to 3,865,987
_3223
Shewana3_3224: Shewana3_3224 - lysine exporter protein LysE/YggA (RefSeq), at 3,866,093 to 3,866,707
_3224
Position (kb)
3864
3865
3866 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3863.974 kb on + strand, within Shewana3_3221 at 3864.155 kb on - strand, within Shewana3_3221 at 3864.166 kb on - strand, within Shewana3_3221 at 3864.184 kb on - strand, within Shewana3_3221 at 3864.189 kb on - strand, within Shewana3_3221 at 3864.638 kb on - strand at 3864.749 kb on - strand at 3864.749 kb on - strand at 3864.896 kb on + strand, within Shewana3_3222 at 3864.942 kb on - strand, within Shewana3_3222 at 3864.975 kb on + strand, within Shewana3_3222 at 3865.089 kb on + strand, within Shewana3_3222 at 3865.089 kb on + strand, within Shewana3_3222 at 3865.302 kb on + strand at 3865.378 kb on + strand at 3865.562 kb on + strand at 3865.597 kb on + strand at 3865.605 kb on - strand at 3865.620 kb on - strand at 3865.635 kb on - strand at 3865.743 kb on + strand, within Shewana3_3223 at 3865.982 kb on + strand at 3866.023 kb on - strand at 3866.079 kb on - strand at 3866.079 kb on - strand at 3866.266 kb on - strand, within Shewana3_3224
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 3,863,974 + Shewana3_3221 0.14 -0.1 3,864,155 - Shewana3_3221 0.41 +0.1 3,864,166 - Shewana3_3221 0.42 +0.3 3,864,184 - Shewana3_3221 0.45 +0.1 3,864,189 - Shewana3_3221 0.46 -2.8 3,864,638 - -1.0 3,864,749 - +0.7 3,864,749 - -1.2 3,864,896 + Shewana3_3222 0.12 +0.5 3,864,942 - Shewana3_3222 0.23 -2.6 3,864,975 + Shewana3_3222 0.31 +0.6 3,865,089 + Shewana3_3222 0.57 +0.6 3,865,089 + Shewana3_3222 0.57 +2.7 3,865,302 + -1.5 3,865,378 + +1.1 3,865,562 + -0.9 3,865,597 + +0.3 3,865,605 - +0.6 3,865,620 - -1.0 3,865,635 - -0.5 3,865,743 + Shewana3_3223 0.22 +0.3 3,865,982 + +0.6 3,866,023 - +0.3 3,866,079 - +2.1 3,866,079 - -1.2 3,866,266 - Shewana3_3224 0.28 -0.3
Or see this region's nucleotide sequence