Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3116 and Shewana3_3117 overlap by 1 nucleotides Shewana3_3117 and Shewana3_3118 are separated by 488 nucleotides
Shewana3_3116: Shewana3_3116 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,738,758 to 3,740,245
_3116
Shewana3_3117: Shewana3_3117 - hypothetical protein (RefSeq), at 3,740,245 to 3,741,234
_3117
Shewana3_3118: Shewana3_3118 - hypothetical protein (RefSeq), at 3,741,723 to 3,742,625
_3118
Position (kb)
3740
3741
3742 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3739.373 kb on - strand, within Shewana3_3116 at 3739.405 kb on - strand, within Shewana3_3116 at 3739.502 kb on - strand, within Shewana3_3116 at 3739.548 kb on + strand, within Shewana3_3116 at 3739.736 kb on - strand, within Shewana3_3116 at 3739.736 kb on - strand, within Shewana3_3116 at 3739.736 kb on - strand, within Shewana3_3116 at 3739.860 kb on + strand, within Shewana3_3116 at 3739.868 kb on - strand, within Shewana3_3116 at 3740.179 kb on - strand at 3740.349 kb on + strand, within Shewana3_3117 at 3740.357 kb on - strand, within Shewana3_3117 at 3740.551 kb on - strand, within Shewana3_3117 at 3740.820 kb on - strand, within Shewana3_3117 at 3740.958 kb on + strand, within Shewana3_3117 at 3740.966 kb on - strand, within Shewana3_3117 at 3741.139 kb on - strand at 3741.231 kb on + strand at 3741.476 kb on + strand at 3741.922 kb on + strand, within Shewana3_3118 at 3741.961 kb on + strand, within Shewana3_3118 at 3742.123 kb on + strand, within Shewana3_3118 at 3742.159 kb on - strand, within Shewana3_3118
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 3,739,373 - Shewana3_3116 0.41 +0.3 3,739,405 - Shewana3_3116 0.43 -0.4 3,739,502 - Shewana3_3116 0.50 +1.1 3,739,548 + Shewana3_3116 0.53 +0.1 3,739,736 - Shewana3_3116 0.66 -1.0 3,739,736 - Shewana3_3116 0.66 -0.4 3,739,736 - Shewana3_3116 0.66 -0.2 3,739,860 + Shewana3_3116 0.74 +0.4 3,739,868 - Shewana3_3116 0.75 +0.4 3,740,179 - +0.6 3,740,349 + Shewana3_3117 0.11 +0.4 3,740,357 - Shewana3_3117 0.11 +1.1 3,740,551 - Shewana3_3117 0.31 +4.1 3,740,820 - Shewana3_3117 0.58 +0.8 3,740,958 + Shewana3_3117 0.72 +1.0 3,740,966 - Shewana3_3117 0.73 -4.3 3,741,139 - +0.2 3,741,231 + +0.9 3,741,476 + +0.4 3,741,922 + Shewana3_3118 0.22 +0.5 3,741,961 + Shewana3_3118 0.26 +1.0 3,742,123 + Shewana3_3118 0.44 +0.2 3,742,159 - Shewana3_3118 0.48 +0.6
Or see this region's nucleotide sequence