Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3018 and Shewana3_3019 are separated by 288 nucleotides Shewana3_3019 and Shewana3_3020 are separated by 101 nucleotides
Shewana3_3018: Shewana3_3018 - signal recognition particle protein (RefSeq), at 3,623,855 to 3,625,228
_3018
Shewana3_3019: Shewana3_3019 - cytochrome c assembly protein (RefSeq), at 3,625,517 to 3,626,305
_3019
Shewana3_3020: Shewana3_3020 - hypothetical protein (RefSeq), at 3,626,407 to 3,627,678
_3020
Position (kb)
3625
3626
3627 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3625.361 kb on + strand at 3625.486 kb on + strand at 3625.585 kb on + strand at 3625.796 kb on + strand, within Shewana3_3019 at 3625.818 kb on + strand, within Shewana3_3019 at 3625.892 kb on + strand, within Shewana3_3019 at 3625.902 kb on + strand at 3625.932 kb on - strand, within Shewana3_3019 at 3626.191 kb on + strand, within Shewana3_3019 at 3626.191 kb on + strand, within Shewana3_3019 at 3626.232 kb on - strand at 3626.249 kb on + strand at 3626.424 kb on - strand at 3626.501 kb on + strand at 3626.515 kb on + strand at 3626.838 kb on - strand, within Shewana3_3020 at 3626.900 kb on + strand, within Shewana3_3020 at 3626.940 kb on - strand, within Shewana3_3020
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 3,625,361 + +0.1 3,625,486 + -3.1 3,625,585 + -2.7 3,625,796 + Shewana3_3019 0.35 -1.6 3,625,818 + Shewana3_3019 0.38 -3.2 3,625,892 + Shewana3_3019 0.48 -2.9 3,625,902 + -0.5 3,625,932 - Shewana3_3019 0.53 -2.5 3,626,191 + Shewana3_3019 0.85 -3.0 3,626,191 + Shewana3_3019 0.85 -5.3 3,626,232 - -6.2 3,626,249 + -2.8 3,626,424 - -0.9 3,626,501 + +0.7 3,626,515 + -1.6 3,626,838 - Shewana3_3020 0.34 -1.6 3,626,900 + Shewana3_3020 0.39 -0.1 3,626,940 - Shewana3_3020 0.42 -0.7
Or see this region's nucleotide sequence