Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2715 and Shewana3_2716 are separated by 254 nucleotides Shewana3_2716 and Shewana3_2717 are separated by 331 nucleotides Shewana3_2717 and Shewana3_2718 are separated by 25 nucleotides
Shewana3_2715: Shewana3_2715 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 3,245,612 to 3,246,661
_2715
Shewana3_2716: Shewana3_2716 - hypothetical protein (RefSeq), at 3,246,916 to 3,248,286
_2716
Shewana3_2717: Shewana3_2717 - hypothetical protein (RefSeq), at 3,248,618 to 3,248,851
_2717
Shewana3_2718: Shewana3_2718 - hypothetical protein (RefSeq), at 3,248,877 to 3,249,239
_2718
Position (kb)
3246
3247
3248
3249 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3246.399 kb on - strand, within Shewana3_2715 at 3246.628 kb on - strand at 3246.804 kb on + strand at 3246.810 kb on - strand at 3246.818 kb on + strand at 3247.047 kb on - strand at 3247.331 kb on - strand, within Shewana3_2716 at 3247.353 kb on - strand, within Shewana3_2716 at 3247.360 kb on + strand, within Shewana3_2716 at 3247.592 kb on + strand, within Shewana3_2716 at 3247.686 kb on - strand, within Shewana3_2716 at 3247.808 kb on - strand, within Shewana3_2716 at 3247.821 kb on - strand, within Shewana3_2716 at 3247.869 kb on + strand, within Shewana3_2716 at 3247.869 kb on + strand, within Shewana3_2716 at 3247.877 kb on - strand, within Shewana3_2716 at 3247.921 kb on + strand, within Shewana3_2716 at 3248.001 kb on - strand, within Shewana3_2716 at 3248.097 kb on + strand, within Shewana3_2716 at 3248.105 kb on - strand, within Shewana3_2716 at 3248.105 kb on - strand, within Shewana3_2716 at 3248.132 kb on + strand, within Shewana3_2716 at 3248.264 kb on + strand at 3248.309 kb on - strand at 3248.427 kb on + strand at 3248.435 kb on - strand at 3248.552 kb on + strand at 3248.795 kb on + strand, within Shewana3_2717 at 3248.795 kb on + strand, within Shewana3_2717 at 3248.803 kb on - strand, within Shewana3_2717 at 3248.919 kb on + strand, within Shewana3_2718 at 3248.969 kb on - strand, within Shewana3_2718 at 3249.209 kb on - strand at 3249.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 3,246,399 - Shewana3_2715 0.75 -0.2 3,246,628 - +3.8 3,246,804 + +1.1 3,246,810 - -1.2 3,246,818 + +0.8 3,247,047 - -1.1 3,247,331 - Shewana3_2716 0.30 -0.4 3,247,353 - Shewana3_2716 0.32 -0.5 3,247,360 + Shewana3_2716 0.32 -1.1 3,247,592 + Shewana3_2716 0.49 -1.3 3,247,686 - Shewana3_2716 0.56 -2.2 3,247,808 - Shewana3_2716 0.65 -1.9 3,247,821 - Shewana3_2716 0.66 -1.4 3,247,869 + Shewana3_2716 0.70 +0.1 3,247,869 + Shewana3_2716 0.70 +2.2 3,247,877 - Shewana3_2716 0.70 +0.1 3,247,921 + Shewana3_2716 0.73 -1.9 3,248,001 - Shewana3_2716 0.79 +0.5 3,248,097 + Shewana3_2716 0.86 +0.1 3,248,105 - Shewana3_2716 0.87 -0.8 3,248,105 - Shewana3_2716 0.87 -0.1 3,248,132 + Shewana3_2716 0.89 +0.6 3,248,264 + -0.7 3,248,309 - -0.7 3,248,427 + -1.0 3,248,435 - -1.7 3,248,552 + +2.6 3,248,795 + Shewana3_2717 0.76 +0.2 3,248,795 + Shewana3_2717 0.76 +0.6 3,248,803 - Shewana3_2717 0.79 +0.5 3,248,919 + Shewana3_2718 0.12 -0.1 3,248,969 - Shewana3_2718 0.25 +0.1 3,249,209 - +0.4 3,249,229 - -0.6
Or see this region's nucleotide sequence