Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2613 and Shewana3_2614 are separated by 48 nucleotides Shewana3_2614 and Shewana3_2615 are separated by 54 nucleotides Shewana3_2615 and Shewana3_2616 are separated by 22 nucleotides Shewana3_2616 and Shewana3_2617 are separated by 70 nucleotides
Shewana3_2613: Shewana3_2613 - hypothetical protein (RefSeq), at 3,120,105 to 3,120,914
_2613
Shewana3_2614: Shewana3_2614 - LysR family transcriptional regulator (RefSeq), at 3,120,963 to 3,121,925
_2614
Shewana3_2615: Shewana3_2615 - hypothetical protein (RefSeq), at 3,121,980 to 3,122,366
_2615
Shewana3_2616: Shewana3_2616 - RNA-binding S4 domain-containing protein (RefSeq), at 3,122,389 to 3,122,619
_2616
Shewana3_2617: Shewana3_2617 - GCN5-related N-acetyltransferase (RefSeq), at 3,122,690 to 3,123,226
_2617
Position (kb)
3120
3121
3122 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3120.023 kb on + strand at 3120.054 kb on - strand at 3120.081 kb on + strand at 3120.220 kb on - strand, within Shewana3_2613 at 3120.329 kb on - strand, within Shewana3_2613 at 3120.407 kb on - strand, within Shewana3_2613 at 3120.646 kb on - strand, within Shewana3_2613 at 3120.678 kb on + strand, within Shewana3_2613 at 3120.759 kb on + strand, within Shewana3_2613 at 3121.086 kb on + strand, within Shewana3_2614 at 3121.087 kb on - strand, within Shewana3_2614 at 3121.109 kb on - strand, within Shewana3_2614 at 3121.311 kb on + strand, within Shewana3_2614 at 3121.311 kb on - strand, within Shewana3_2614 at 3121.452 kb on - strand, within Shewana3_2614 at 3121.462 kb on + strand, within Shewana3_2614 at 3121.727 kb on - strand, within Shewana3_2614 at 3121.776 kb on - strand, within Shewana3_2614 at 3121.788 kb on + strand, within Shewana3_2614 at 3121.796 kb on - strand, within Shewana3_2614 at 3121.796 kb on - strand, within Shewana3_2614 at 3121.796 kb on - strand, within Shewana3_2614 at 3121.832 kb on - strand at 3121.908 kb on + strand at 3122.141 kb on - strand, within Shewana3_2615 at 3122.301 kb on - strand, within Shewana3_2615 at 3122.550 kb on - strand, within Shewana3_2616 at 3122.833 kb on - strand, within Shewana3_2617 at 3122.873 kb on + strand, within Shewana3_2617 at 3122.890 kb on + strand, within Shewana3_2617 at 3122.920 kb on - strand, within Shewana3_2617 at 3122.921 kb on - strand, within Shewana3_2617 at 3122.921 kb on - strand, within Shewana3_2617
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 3,120,023 + +1.2 3,120,054 - -1.4 3,120,081 + +0.9 3,120,220 - Shewana3_2613 0.14 -3.2 3,120,329 - Shewana3_2613 0.28 -6.2 3,120,407 - Shewana3_2613 0.37 -5.3 3,120,646 - Shewana3_2613 0.67 -3.2 3,120,678 + Shewana3_2613 0.71 -3.2 3,120,759 + Shewana3_2613 0.81 -4.5 3,121,086 + Shewana3_2614 0.13 -2.3 3,121,087 - Shewana3_2614 0.13 -1.1 3,121,109 - Shewana3_2614 0.15 -3.4 3,121,311 + Shewana3_2614 0.36 -1.8 3,121,311 - Shewana3_2614 0.36 -2.6 3,121,452 - Shewana3_2614 0.51 -0.2 3,121,462 + Shewana3_2614 0.52 -1.1 3,121,727 - Shewana3_2614 0.79 -3.2 3,121,776 - Shewana3_2614 0.84 -3.2 3,121,788 + Shewana3_2614 0.86 -0.2 3,121,796 - Shewana3_2614 0.87 -4.4 3,121,796 - Shewana3_2614 0.87 -2.5 3,121,796 - Shewana3_2614 0.87 -1.2 3,121,832 - +0.4 3,121,908 + -0.9 3,122,141 - Shewana3_2615 0.42 +0.7 3,122,301 - Shewana3_2615 0.83 +0.8 3,122,550 - Shewana3_2616 0.70 -0.2 3,122,833 - Shewana3_2617 0.27 +1.2 3,122,873 + Shewana3_2617 0.34 +0.7 3,122,890 + Shewana3_2617 0.37 -1.7 3,122,920 - Shewana3_2617 0.43 +1.0 3,122,921 - Shewana3_2617 0.43 -0.6 3,122,921 - Shewana3_2617 0.43 +0.1
Or see this region's nucleotide sequence