Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2550 and Shewana3_2551 are separated by 275 nucleotides Shewana3_2551 and Shewana3_2552 are separated by 294 nucleotides
Shewana3_2550: Shewana3_2550 - patatin (RefSeq), at 3,049,424 to 3,050,431
_2550
Shewana3_2551: Shewana3_2551 - TonB-dependent siderophore receptor (RefSeq), at 3,050,707 to 3,052,923
_2551
Shewana3_2552: Shewana3_2552 - acyl-CoA dehydrogenase domain-containing protein (RefSeq), at 3,053,218 to 3,055,008
_2552
Position (kb)
3050
3051
3052
3053 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3049.980 kb on - strand, within Shewana3_2550 at 3050.972 kb on + strand, within Shewana3_2551 at 3050.987 kb on - strand, within Shewana3_2551 at 3051.260 kb on + strand, within Shewana3_2551 at 3051.268 kb on - strand, within Shewana3_2551 at 3051.449 kb on - strand, within Shewana3_2551 at 3051.649 kb on - strand, within Shewana3_2551 at 3051.732 kb on - strand, within Shewana3_2551 at 3051.828 kb on - strand, within Shewana3_2551 at 3052.106 kb on - strand, within Shewana3_2551 at 3052.267 kb on - strand, within Shewana3_2551 at 3052.448 kb on + strand, within Shewana3_2551 at 3053.287 kb on + strand at 3053.295 kb on - strand at 3053.305 kb on - strand at 3053.415 kb on - strand, within Shewana3_2552 at 3053.891 kb on + strand, within Shewana3_2552
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 3,049,980 - Shewana3_2550 0.55 -2.1 3,050,972 + Shewana3_2551 0.12 +0.6 3,050,987 - Shewana3_2551 0.13 -0.6 3,051,260 + Shewana3_2551 0.25 -0.1 3,051,268 - Shewana3_2551 0.25 +0.7 3,051,449 - Shewana3_2551 0.33 -1.0 3,051,649 - Shewana3_2551 0.42 -1.1 3,051,732 - Shewana3_2551 0.46 +0.4 3,051,828 - Shewana3_2551 0.51 +1.9 3,052,106 - Shewana3_2551 0.63 -1.2 3,052,267 - Shewana3_2551 0.70 +3.0 3,052,448 + Shewana3_2551 0.79 +0.5 3,053,287 + +0.2 3,053,295 - +2.1 3,053,305 - +1.5 3,053,415 - Shewana3_2552 0.11 +1.1 3,053,891 + Shewana3_2552 0.38 +0.1
Or see this region's nucleotide sequence