Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2534

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2532 and Shewana3_2533 are separated by 0 nucleotidesShewana3_2533 and Shewana3_2534 overlap by 1 nucleotidesShewana3_2534 and Shewana3_2535 overlap by 11 nucleotidesShewana3_2535 and Shewana3_2536 are separated by 170 nucleotides Shewana3_2532: Shewana3_2532 - TolA family protein (RefSeq), at 3,028,872 to 3,029,894 _2532 Shewana3_2533: Shewana3_2533 - biopolymer transport protein ExbD/TolR (RefSeq), at 3,029,895 to 3,030,329 _2533 Shewana3_2534: Shewana3_2534 - MotA/TolQ/ExbB proton channel (RefSeq), at 3,030,329 to 3,031,015 _2534 Shewana3_2535: Shewana3_2535 - 4-hydroxybenzoyl-CoA thioesterase (RefSeq), at 3,031,005 to 3,031,406 _2535 Shewana3_2536: Shewana3_2536 - prolyl oligopeptidase (RefSeq), at 3,031,577 to 3,033,757 _2536 Position (kb) 3030 3031 3032Strain fitness (log2 ratio) -2 -1 0 1at 3031.033 kb on - strandat 3031.056 kb on - strand, within Shewana3_2535at 3031.056 kb on - strand, within Shewana3_2535at 3031.078 kb on - strand, within Shewana3_2535at 3031.291 kb on - strand, within Shewana3_2535at 3031.306 kb on + strand, within Shewana3_2535at 3031.360 kb on - strand, within Shewana3_2535at 3031.378 kb on - strandat 3031.644 kb on - strandat 3031.689 kb on + strandat 3031.895 kb on + strand, within Shewana3_2536at 3031.995 kb on - strand, within Shewana3_2536

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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3,031,033 - +0.0
3,031,056 - Shewana3_2535 0.13 -2.0
3,031,056 - Shewana3_2535 0.13 -1.3
3,031,078 - Shewana3_2535 0.18 +0.3
3,031,291 - Shewana3_2535 0.71 +0.2
3,031,306 + Shewana3_2535 0.75 -0.4
3,031,360 - Shewana3_2535 0.88 -0.5
3,031,378 - -0.2
3,031,644 - -0.5
3,031,689 + -1.1
3,031,895 + Shewana3_2536 0.15 +0.3
3,031,995 - Shewana3_2536 0.19 -1.7

Or see this region's nucleotide sequence