Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2428 and Shewana3_2429 are separated by 138 nucleotides Shewana3_2429 and Shewana3_2430 are separated by 100 nucleotides
Shewana3_2428: Shewana3_2428 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 2,910,383 to 2,912,173
_2428
Shewana3_2429: Shewana3_2429 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 2,912,312 to 2,913,424
_2429
Shewana3_2430: Shewana3_2430 - LysR family transcriptional regulator (RefSeq), at 2,913,525 to 2,914,391
_2430
Position (kb)
2912
2913
2914 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2911.362 kb on + strand, within Shewana3_2428 at 2911.362 kb on + strand, within Shewana3_2428 at 2911.503 kb on + strand, within Shewana3_2428 at 2911.511 kb on - strand, within Shewana3_2428 at 2911.731 kb on + strand, within Shewana3_2428 at 2911.949 kb on - strand, within Shewana3_2428 at 2912.063 kb on + strand at 2912.221 kb on + strand at 2912.409 kb on - strand at 2912.409 kb on - strand at 2912.519 kb on - strand, within Shewana3_2429 at 2912.698 kb on + strand, within Shewana3_2429 at 2912.700 kb on - strand, within Shewana3_2429 at 2912.706 kb on - strand, within Shewana3_2429 at 2912.706 kb on - strand, within Shewana3_2429 at 2912.766 kb on - strand, within Shewana3_2429 at 2912.942 kb on - strand, within Shewana3_2429 at 2913.018 kb on - strand, within Shewana3_2429 at 2913.176 kb on + strand, within Shewana3_2429 at 2913.208 kb on + strand, within Shewana3_2429 at 2913.732 kb on + strand, within Shewana3_2430 at 2913.828 kb on - strand, within Shewana3_2430 at 2913.862 kb on - strand, within Shewana3_2430 at 2913.958 kb on + strand, within Shewana3_2430 at 2914.136 kb on - strand, within Shewana3_2430 at 2914.184 kb on - strand, within Shewana3_2430 at 2914.266 kb on + strand, within Shewana3_2430
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 2,911,362 + Shewana3_2428 0.55 +0.0 2,911,362 + Shewana3_2428 0.55 -0.9 2,911,503 + Shewana3_2428 0.63 -1.5 2,911,511 - Shewana3_2428 0.63 -0.6 2,911,731 + Shewana3_2428 0.75 -2.1 2,911,949 - Shewana3_2428 0.87 +0.7 2,912,063 + +0.4 2,912,221 + +0.7 2,912,409 - +0.7 2,912,409 - +0.1 2,912,519 - Shewana3_2429 0.19 +0.4 2,912,698 + Shewana3_2429 0.35 +1.4 2,912,700 - Shewana3_2429 0.35 +2.2 2,912,706 - Shewana3_2429 0.35 -0.7 2,912,706 - Shewana3_2429 0.35 +0.5 2,912,766 - Shewana3_2429 0.41 -1.3 2,912,942 - Shewana3_2429 0.57 +0.6 2,913,018 - Shewana3_2429 0.63 +1.0 2,913,176 + Shewana3_2429 0.78 +0.8 2,913,208 + Shewana3_2429 0.81 +0.3 2,913,732 + Shewana3_2430 0.24 -0.3 2,913,828 - Shewana3_2430 0.35 -2.4 2,913,862 - Shewana3_2430 0.39 -0.2 2,913,958 + Shewana3_2430 0.50 +2.9 2,914,136 - Shewana3_2430 0.70 -0.4 2,914,184 - Shewana3_2430 0.76 -2.6 2,914,266 + Shewana3_2430 0.85 -0.1
Or see this region's nucleotide sequence