Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2333 and Shewana3_2334 are separated by 96 nucleotides Shewana3_2334 and Shewana3_2335 are separated by 78 nucleotides Shewana3_2335 and Shewana3_2336 overlap by 8 nucleotides Shewana3_2336 and Shewana3_2337 are separated by 95 nucleotides
Shewana3_2333: Shewana3_2333 - permease (RefSeq), at 2,808,718 to 2,809,716
_2333
Shewana3_2334: Shewana3_2334 - protein tyrosine phosphatase (RefSeq), at 2,809,813 to 2,810,319
_2334
Shewana3_2335: Shewana3_2335 - ArsR family transcriptional regulator (RefSeq), at 2,810,398 to 2,810,745
_2335
Shewana3_2336: Shewana3_2336 - protein tyrosine phosphatase (RefSeq), at 2,810,738 to 2,811,154
_2336
Shewana3_2337: Shewana3_2337 - ArsR family transcriptional regulator (RefSeq), at 2,811,250 to 2,811,537
_2337
Position (kb)
2810
2811 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2809.454 kb on - strand, within Shewana3_2333 at 2809.792 kb on + strand at 2809.792 kb on + strand at 2809.800 kb on - strand at 2809.891 kb on + strand at 2810.003 kb on - strand, within Shewana3_2334 at 2810.161 kb on + strand, within Shewana3_2334 at 2810.180 kb on - strand, within Shewana3_2334 at 2810.667 kb on - strand, within Shewana3_2335 at 2810.743 kb on - strand at 2810.804 kb on + strand, within Shewana3_2336 at 2810.855 kb on - strand, within Shewana3_2336 at 2811.036 kb on + strand at 2811.244 kb on - strand at 2811.417 kb on - strand, within Shewana3_2337 at 2811.485 kb on - strand, within Shewana3_2337 at 2811.629 kb on + strand at 2811.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 2,809,454 - Shewana3_2333 0.74 -3.7 2,809,792 + +0.3 2,809,792 + +0.0 2,809,800 - -1.3 2,809,891 + +2.0 2,810,003 - Shewana3_2334 0.37 +0.1 2,810,161 + Shewana3_2334 0.69 -0.8 2,810,180 - Shewana3_2334 0.72 +0.3 2,810,667 - Shewana3_2335 0.77 -0.8 2,810,743 - +0.2 2,810,804 + Shewana3_2336 0.16 +0.8 2,810,855 - Shewana3_2336 0.28 +0.4 2,811,036 + +2.1 2,811,244 - +0.5 2,811,417 - Shewana3_2337 0.58 -0.7 2,811,485 - Shewana3_2337 0.82 -2.1 2,811,629 + -1.8 2,811,656 - +0.8
Or see this region's nucleotide sequence