Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1865

Experiment: Glycine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpheT and ihfA are separated by 3 nucleotidesihfA and Shewana3_1866 are separated by 96 nucleotides Shewana3_1864: pheT - phenylalanyl-tRNA synthetase subunit beta (RefSeq), at 2,208,269 to 2,210,656 pheT Shewana3_1865: ihfA - integration host factor subunit alpha (RefSeq), at 2,210,660 to 2,210,956 ihfA Shewana3_1866: Shewana3_1866 - lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (RefSeq), at 2,211,053 to 2,211,991 _1866 Position (kb) 2210 2211Strain fitness (log2 ratio) -1 0 1 2at 2211.196 kb on - strandat 2211.523 kb on + strand, within Shewana3_1866at 2211.569 kb on + strand, within Shewana3_1866

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
remove
2,211,196 - +2.1
2,211,523 + Shewana3_1866 0.50 +0.1
2,211,569 + Shewana3_1866 0.55 -0.6

Or see this region's nucleotide sequence