Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1793

Experiment: Glycine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycine (N)
2,120,641	+		Shewana3_1792	0.43	-1.8
2,120,699	+		Shewana3_1792	0.50	+0.0
2,120,701	-		Shewana3_1792	0.50	-1.2
2,120,747	+		Shewana3_1792	0.55	+0.3
2,120,747	+		Shewana3_1792	0.55	-1.3
2,120,747	+		Shewana3_1792	0.55	-1.2
2,120,747	+		Shewana3_1792	0.55	+0.2
2,120,753	+		Shewana3_1792	0.56	+0.4
2,120,755	-		Shewana3_1792	0.56	-0.3
2,120,755	-		Shewana3_1792	0.56	+0.2
2,120,755	-		Shewana3_1792	0.56	-1.1
2,120,755	-		Shewana3_1792	0.56	-0.1
2,120,758	+		Shewana3_1792	0.56	+1.3
2,120,761	-		Shewana3_1792	0.57	+0.7
2,120,776	-		Shewana3_1792	0.58	-1.2
2,120,846	+		Shewana3_1792	0.66	-1.3
2,120,848	+		Shewana3_1792	0.67	+0.3
2,120,854	-		Shewana3_1792	0.67	+1.5
2,120,854	-		Shewana3_1792	0.67	+0.4
2,120,854	-		Shewana3_1792	0.67	+1.0
2,120,856	-		Shewana3_1792	0.67	-1.2
2,120,856	-		Shewana3_1792	0.67	-0.1
2,120,866	-		Shewana3_1792	0.69	+0.4
2,120,886	+		Shewana3_1792	0.71	-1.1
2,120,891	+		Shewana3_1792	0.71	-1.8
2,120,895	-		Shewana3_1792	0.72	+0.2
2,120,909	+		Shewana3_1792	0.73	-0.8
2,120,924	-		Shewana3_1792	0.75	+0.6
2,121,016	+		Shewana3_1792	0.85	+0.8
2,121,017	-		Shewana3_1792	0.86	+0.8
2,121,077	-				+1.6
2,121,077	-				-1.1
2,121,077	-				-0.1
2,121,091	+				+0.9
2,121,091	+				-0.3
2,121,091	+				-0.5
2,121,106	-				+0.5
2,121,114	-				+0.6
2,121,114	-				+1.1
2,121,114	-				-1.0
2,121,129	+				-1.1
2,121,130	-				-0.9
2,121,130	-				-0.6
2,121,139	+				-1.4
2,121,147	-				+1.1
2,121,178	+				+1.2
2,121,178	+				-0.5
2,121,191	-				+0.8
2,121,261	+				+0.2
2,121,316	-				+0.4
2,121,372	+				+0.0
2,121,384	+				+0.1
2,121,433	+				+0.3
2,121,456	+				-0.5
2,121,563	+		Shewana3_1793	0.19	+0.0
2,121,567	+		Shewana3_1793	0.19	-0.2
2,121,567	+		Shewana3_1793	0.19	-0.2
2,121,567	+		Shewana3_1793	0.19	+0.2
2,121,567	+		Shewana3_1793	0.19	+0.9
2,121,567	+		Shewana3_1793	0.19	+1.2
2,121,567	+		Shewana3_1793	0.19	-1.1
2,121,567	+		Shewana3_1793	0.19	-0.8
2,121,567	+		Shewana3_1793	0.19	-1.2
2,121,575	-		Shewana3_1793	0.20	+1.8
2,121,575	-		Shewana3_1793	0.20	-0.2
2,121,575	-		Shewana3_1793	0.20	+0.8
2,121,575	-		Shewana3_1793	0.20	+0.7
2,121,631	-		Shewana3_1793	0.26	-0.1
2,121,667	+		Shewana3_1793	0.30	-0.2
2,121,781	+		Shewana3_1793	0.43	+1.4
2,121,784	+		Shewana3_1793	0.43	-1.4
2,121,861	+		Shewana3_1793	0.51	-0.4
2,122,028	+		Shewana3_1793	0.69	+0.5
2,122,036	-		Shewana3_1793	0.70	+3.7
2,122,036	-		Shewana3_1793	0.70	-1.0
2,122,068	+		Shewana3_1793	0.74	+3.1
2,122,095	+		Shewana3_1793	0.77	+0.6
2,122,113	+		Shewana3_1793	0.79	+0.7
2,122,113	+		Shewana3_1793	0.79	-1.6
2,122,121	-		Shewana3_1793	0.80	+1.4
2,122,144	+		Shewana3_1793	0.82	+0.4
2,122,161	+		Shewana3_1793	0.84	+0.5
2,122,162	-		Shewana3_1793	0.84	+0.6
2,122,216	-				-0.1
2,122,275	-				-1.2
2,122,275	-				+0.4
2,122,276	-				-1.5
2,122,494	+				+3.4
2,122,510	-				+1.0
2,122,569	+				+0.1
2,122,589	-				+0.6
2,122,657	-				+3.1
2,122,749	+				-0.4
2,122,757	-				-0.6
2,122,758	-				+1.4
2,122,763	-				+3.9
2,122,773	+				-0.1
2,122,773	+				-0.3
2,122,781	-				+1.0
2,122,809	+				+1.4
2,122,809	+				-2.5
2,122,809	+				+0.4
2,122,817	-				-0.4
2,122,817	-				-0.3
2,122,817	-				+0.4
2,122,907	+				+0.4
2,122,915	+				+0.9
2,122,915	-				-1.5
2,122,954	+				-0.3
2,122,954	+				+0.5
2,122,962	-				-0.2
2,122,962	-				-2.3
2,122,963	-				+0.6
2,122,974	+				-1.1
2,122,987	-				-1.2
2,122,987	-				+0.2
2,122,994	+		Shewana3_1794	0.10	-1.2
2,122,994	+		Shewana3_1794	0.10	-0.7
2,122,997	-		Shewana3_1794	0.10	-1.5
2,123,002	-		Shewana3_1794	0.11	-1.4
2,123,008	+		Shewana3_1794	0.11	+0.4
2,123,008	+		Shewana3_1794	0.11	+0.7
2,123,008	+		Shewana3_1794	0.11	+0.2
2,123,008	+		Shewana3_1794	0.11	-0.8
2,123,016	-		Shewana3_1794	0.12	-0.1
2,123,016	-		Shewana3_1794	0.12	-1.4
2,123,016	-		Shewana3_1794	0.12	+0.2
2,123,016	-		Shewana3_1794	0.12	-0.9
2,123,016	-				+0.1
2,123,016	-		Shewana3_1794	0.12	-0.5
2,123,016	-		Shewana3_1794	0.12	+0.1
2,123,028	-		Shewana3_1794	0.12	+0.7
2,123,057	-		Shewana3_1794	0.14	+0.5
2,123,057	-		Shewana3_1794	0.14	-1.3
2,123,059	+		Shewana3_1794	0.14	-0.6
2,123,067	-		Shewana3_1794	0.15	+0.9
2,123,132	+		Shewana3_1794	0.19	+1.3
2,123,133	+		Shewana3_1794	0.20	-1.2
2,123,133	+		Shewana3_1794	0.20	+0.7
2,123,133	+		Shewana3_1794	0.20	+2.1
2,123,133	+		Shewana3_1794	0.20	+0.8
2,123,133	+		Shewana3_1794	0.20	-0.8
2,123,133	+		Shewana3_1794	0.20	-1.0
2,123,133	+		Shewana3_1794	0.20	-1.3
2,123,139	-		Shewana3_1794	0.20	-0.5
2,123,140	-		Shewana3_1794	0.20	-2.1
2,123,140	-		Shewana3_1794	0.20	-1.1
2,123,141	-		Shewana3_1794	0.20	+0.1
2,123,141	-		Shewana3_1794	0.20	+0.2
2,123,141	-		Shewana3_1794	0.20	-0.5
2,123,141	-		Shewana3_1794	0.20	-0.4
2,123,141	-		Shewana3_1794	0.20	-1.5
2,123,141	-		Shewana3_1794	0.20	-0.5
2,123,141	-		Shewana3_1794	0.20	-1.1
2,123,228	+		Shewana3_1794	0.26	-1.3
2,123,229	+		Shewana3_1794	0.26	+1.1
2,123,230	-		Shewana3_1794	0.26	+0.5
2,123,230	-		Shewana3_1794	0.26	+0.8
2,123,236	-		Shewana3_1794	0.27	-1.5
2,123,299	+		Shewana3_1794	0.31	+0.7
2,123,301	+		Shewana3_1794	0.31	+0.1