Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1774

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1772 and Shewana3_1773 overlap by 14 nucleotidesShewana3_1773 and Shewana3_1774 are separated by 1 nucleotidesShewana3_1774 and Shewana3_1775 are separated by 206 nucleotidesShewana3_1775 and Shewana3_1776 are separated by 15 nucleotides Shewana3_1772: Shewana3_1772 - hypothetical protein (RefSeq), at 2,086,673 to 2,089,309 _1772 Shewana3_1773: Shewana3_1773 - paraquat-inducible protein A (RefSeq), at 2,089,296 to 2,089,913 _1773 Shewana3_1774: Shewana3_1774 - paraquat-inducible protein A (RefSeq), at 2,089,915 to 2,090,550 _1774 Shewana3_1775: Shewana3_1775 - YebG family protein (RefSeq), at 2,090,757 to 2,091,056 _1775 Shewana3_1776: Shewana3_1776 - putative GAF sensor protein (RefSeq), at 2,091,072 to 2,091,530 _1776 Position (kb) 2089 2090 2091Strain fitness (log2 ratio) -2 -1 0 1at 2088.952 kb on + strand, within Shewana3_1772at 2088.967 kb on - strand, within Shewana3_1772at 2089.216 kb on + strandat 2089.224 kb on - strandat 2089.242 kb on + strandat 2089.326 kb on + strandat 2089.638 kb on + strand, within Shewana3_1773at 2089.638 kb on + strand, within Shewana3_1773at 2089.646 kb on + strand, within Shewana3_1773at 2089.734 kb on - strand, within Shewana3_1773at 2089.808 kb on + strand, within Shewana3_1773at 2090.280 kb on + strand, within Shewana3_1774at 2090.389 kb on - strand, within Shewana3_1774at 2090.690 kb on - strandat 2090.847 kb on + strand, within Shewana3_1775at 2090.875 kb on - strand, within Shewana3_1775at 2091.269 kb on - strand, within Shewana3_1776at 2091.281 kb on + strand, within Shewana3_1776at 2091.281 kb on + strand, within Shewana3_1776at 2091.281 kb on + strand, within Shewana3_1776

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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2,088,952 + Shewana3_1772 0.86 -2.3
2,088,967 - Shewana3_1772 0.87 -2.4
2,089,216 + -0.2
2,089,224 - -0.3
2,089,242 + -1.6
2,089,326 + -1.4
2,089,638 + Shewana3_1773 0.55 -0.9
2,089,638 + Shewana3_1773 0.55 -1.1
2,089,646 + Shewana3_1773 0.57 -0.8
2,089,734 - Shewana3_1773 0.71 -1.5
2,089,808 + Shewana3_1773 0.83 -0.6
2,090,280 + Shewana3_1774 0.57 -0.3
2,090,389 - Shewana3_1774 0.75 +0.8
2,090,690 - +0.9
2,090,847 + Shewana3_1775 0.30 -0.2
2,090,875 - Shewana3_1775 0.39 -0.4
2,091,269 - Shewana3_1776 0.43 -0.8
2,091,281 + Shewana3_1776 0.46 +0.1
2,091,281 + Shewana3_1776 0.46 -1.2
2,091,281 + Shewana3_1776 0.46 -0.2

Or see this region's nucleotide sequence