Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1717 and Shewana3_1718 are separated by 23 nucleotides Shewana3_1718 and Shewana3_1719 are separated by 263 nucleotides Shewana3_1719 and Shewana3_1720 are separated by 126 nucleotides
Shewana3_1717: Shewana3_1717 - NAD-dependent deacetylase (RefSeq), at 2,020,983 to 2,021,726
_1717
Shewana3_1718: Shewana3_1718 - hypothetical protein (RefSeq), at 2,021,750 to 2,022,214
_1718
Shewana3_1719: Shewana3_1719 - hypothetical protein (RefSeq), at 2,022,478 to 2,022,840
_1719
Shewana3_1720: Shewana3_1720 - magnesium and cobalt transport protein CorA (RefSeq), at 2,022,967 to 2,023,914
_1720
Position (kb)
2022
2023 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2021.613 kb on - strand, within Shewana3_1717 at 2021.723 kb on - strand at 2021.723 kb on - strand at 2021.826 kb on - strand, within Shewana3_1718 at 2022.016 kb on - strand, within Shewana3_1718 at 2022.113 kb on + strand, within Shewana3_1718 at 2022.216 kb on - strand at 2022.471 kb on - strand at 2022.633 kb on + strand, within Shewana3_1719 at 2023.143 kb on + strand, within Shewana3_1720 at 2023.416 kb on + strand, within Shewana3_1720 at 2023.424 kb on - strand, within Shewana3_1720 at 2023.556 kb on + strand, within Shewana3_1720 at 2023.564 kb on - strand, within Shewana3_1720 at 2023.753 kb on + strand, within Shewana3_1720
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 2,021,613 - Shewana3_1717 0.85 -2.8 2,021,723 - -0.1 2,021,723 - -0.2 2,021,826 - Shewana3_1718 0.16 +0.8 2,022,016 - Shewana3_1718 0.57 -1.4 2,022,113 + Shewana3_1718 0.78 -1.0 2,022,216 - +0.8 2,022,471 - +0.7 2,022,633 + Shewana3_1719 0.43 -2.3 2,023,143 + Shewana3_1720 0.19 -0.4 2,023,416 + Shewana3_1720 0.47 +0.8 2,023,424 - Shewana3_1720 0.48 +0.2 2,023,556 + Shewana3_1720 0.62 +2.9 2,023,564 - Shewana3_1720 0.63 -1.8 2,023,753 + Shewana3_1720 0.83 -0.6
Or see this region's nucleotide sequence