Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1665 and Shewana3_1666 are separated by 405 nucleotides Shewana3_1666 and Shewana3_1667 are separated by 109 nucleotides Shewana3_1667 and Shewana3_1668 are separated by 68 nucleotides
Shewana3_1665: Shewana3_1665 - hypothetical protein (RefSeq), at 1,956,112 to 1,957,143
_1665
Shewana3_1666: Shewana3_1666 - butyryl-CoA:acetate CoA transferase (RefSeq), at 1,957,549 to 1,958,205
_1666
Shewana3_1667: Shewana3_1667 - 3-oxoacid CoA-transferase, A subunit (RefSeq), at 1,958,315 to 1,959,019
_1667
Shewana3_1668: Shewana3_1668 - hydroxymethylglutaryl-CoA lyase (RefSeq), at 1,959,088 to 1,960,020
_1668
Position (kb)
1957
1958
1959 Strain fitness (log2 ratio)
-1
0
1 at 1957.092 kb on + strand at 1957.092 kb on + strand at 1957.247 kb on + strand at 1957.252 kb on + strand at 1957.252 kb on + strand at 1957.354 kb on + strand at 1957.364 kb on - strand at 1957.380 kb on + strand at 1957.387 kb on + strand at 1957.716 kb on - strand, within Shewana3_1666 at 1958.358 kb on + strand at 1959.085 kb on + strand at 1959.093 kb on - strand at 1959.093 kb on - strand at 1959.131 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 1,957,092 + -1.0 1,957,092 + +0.4 1,957,247 + +0.1 1,957,252 + -0.2 1,957,252 + -0.0 1,957,354 + -0.5 1,957,364 - +0.4 1,957,380 + +0.2 1,957,387 + -0.8 1,957,716 - Shewana3_1666 0.25 -1.7 1,958,358 + +1.4 1,959,085 + +0.2 1,959,093 - +1.5 1,959,093 - -0.9 1,959,131 - +0.5
Or see this region's nucleotide sequence