Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1471

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1470 and Shewana3_1471 are separated by 64 nucleotidesShewana3_1471 and Shewana3_1472 are separated by 55 nucleotidesShewana3_1472 and Shewana3_1473 are separated by 3 nucleotides Shewana3_1470: Shewana3_1470 - major facilitator transporter (RefSeq), at 1,708,987 to 1,710,156 _1470 Shewana3_1471: Shewana3_1471 - ATP-NAD/AcoX kinase (RefSeq), at 1,710,221 to 1,711,363 _1471 Shewana3_1472: Shewana3_1472 - hypothetical protein (RefSeq), at 1,711,419 to 1,711,700 _1472 Shewana3_1473: Shewana3_1473 - tRNA/rRNA methyltransferase (SpoU) (RefSeq), at 1,711,704 to 1,712,312 _1473 Position (kb) 1710 1711 1712Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1709.305 kb on - strand, within Shewana3_1470at 1709.443 kb on + strand, within Shewana3_1470at 1709.481 kb on - strand, within Shewana3_1470at 1709.586 kb on + strand, within Shewana3_1470at 1709.669 kb on + strand, within Shewana3_1470at 1709.669 kb on + strand, within Shewana3_1470at 1709.677 kb on - strand, within Shewana3_1470at 1709.677 kb on - strand, within Shewana3_1470at 1709.974 kb on + strand, within Shewana3_1470at 1710.065 kb on + strandat 1710.092 kb on - strandat 1710.222 kb on - strandat 1710.222 kb on - strandat 1710.276 kb on + strandat 1710.342 kb on - strand, within Shewana3_1471at 1710.510 kb on - strand, within Shewana3_1471at 1710.648 kb on + strand, within Shewana3_1471at 1710.675 kb on + strand, within Shewana3_1471at 1710.690 kb on - strand, within Shewana3_1471at 1710.781 kb on + strand, within Shewana3_1471at 1710.785 kb on + strand, within Shewana3_1471at 1710.833 kb on - strand, within Shewana3_1471at 1710.979 kb on + strand, within Shewana3_1471at 1711.004 kb on - strand, within Shewana3_1471at 1711.068 kb on + strand, within Shewana3_1471at 1711.438 kb on - strandat 1711.449 kb on - strand, within Shewana3_1472at 1711.464 kb on + strand, within Shewana3_1472at 1711.597 kb on + strand, within Shewana3_1472at 1711.597 kb on + strand, within Shewana3_1472at 1711.858 kb on - strand, within Shewana3_1473at 1711.906 kb on - strand, within Shewana3_1473at 1711.935 kb on + strand, within Shewana3_1473at 1711.983 kb on + strand, within Shewana3_1473at 1712.058 kb on + strand, within Shewana3_1473at 1712.217 kb on - strand, within Shewana3_1473at 1712.227 kb on - strand, within Shewana3_1473at 1712.314 kb on - strandat 1712.321 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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1,709,305 - Shewana3_1470 0.27 -1.1
1,709,443 + Shewana3_1470 0.39 +0.4
1,709,481 - Shewana3_1470 0.42 -1.1
1,709,586 + Shewana3_1470 0.51 +0.2
1,709,669 + Shewana3_1470 0.58 +0.8
1,709,669 + Shewana3_1470 0.58 -1.3
1,709,677 - Shewana3_1470 0.59 -1.6
1,709,677 - Shewana3_1470 0.59 -1.0
1,709,974 + Shewana3_1470 0.84 +0.3
1,710,065 + +2.0
1,710,092 - -1.6
1,710,222 - -1.2
1,710,222 - -1.6
1,710,276 + -1.9
1,710,342 - Shewana3_1471 0.11 -2.0
1,710,510 - Shewana3_1471 0.25 -2.4
1,710,648 + Shewana3_1471 0.37 -2.1
1,710,675 + Shewana3_1471 0.40 -3.8
1,710,690 - Shewana3_1471 0.41 -2.8
1,710,781 + Shewana3_1471 0.49 -0.9
1,710,785 + Shewana3_1471 0.49 -2.5
1,710,833 - Shewana3_1471 0.54 -1.2
1,710,979 + Shewana3_1471 0.66 -2.1
1,711,004 - Shewana3_1471 0.69 -2.6
1,711,068 + Shewana3_1471 0.74 -3.3
1,711,438 - -0.3
1,711,449 - Shewana3_1472 0.11 -0.3
1,711,464 + Shewana3_1472 0.16 -1.4
1,711,597 + Shewana3_1472 0.63 -0.2
1,711,597 + Shewana3_1472 0.63 -1.3
1,711,858 - Shewana3_1473 0.25 +0.2
1,711,906 - Shewana3_1473 0.33 -0.9
1,711,935 + Shewana3_1473 0.38 +0.4
1,711,983 + Shewana3_1473 0.46 -0.3
1,712,058 + Shewana3_1473 0.58 -0.5
1,712,217 - Shewana3_1473 0.84 -0.4
1,712,227 - Shewana3_1473 0.86 +0.7
1,712,314 - -0.3
1,712,321 - +0.1

Or see this region's nucleotide sequence