Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1443 and Shewana3_1444 are separated by 584 nucleotides Shewana3_1444 and Shewana3_1445 are separated by 25 nucleotides Shewana3_1445 and Shewana3_1446 are separated by 58 nucleotides
Shewana3_1443: Shewana3_1443 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 1,671,430 to 1,673,859
_1443
Shewana3_1444: Shewana3_1444 - rhodanese domain-containing protein (RefSeq), at 1,674,444 to 1,674,842
_1444
Shewana3_1445: Shewana3_1445 - hypothetical protein (RefSeq), at 1,674,868 to 1,675,080
_1445
Shewana3_1446: Shewana3_1446 - acriflavin resistance protein (RefSeq), at 1,675,139 to 1,678,369
_1446
Position (kb)
1674
1675 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1673.539 kb on - strand, within Shewana3_1443 at 1673.581 kb on + strand, within Shewana3_1443 at 1673.589 kb on - strand, within Shewana3_1443 at 1673.677 kb on + strand at 1673.685 kb on - strand at 1673.783 kb on + strand at 1674.482 kb on - strand at 1674.544 kb on - strand, within Shewana3_1444 at 1674.679 kb on - strand, within Shewana3_1444 at 1675.108 kb on - strand at 1675.240 kb on - strand at 1675.422 kb on - strand at 1675.477 kb on + strand, within Shewana3_1446 at 1675.556 kb on - strand, within Shewana3_1446 at 1675.670 kb on + strand, within Shewana3_1446 at 1675.700 kb on - strand, within Shewana3_1446 at 1675.700 kb on - strand, within Shewana3_1446
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 1,673,539 - Shewana3_1443 0.87 +0.6 1,673,581 + Shewana3_1443 0.89 -1.3 1,673,589 - Shewana3_1443 0.89 -1.1 1,673,677 + +0.3 1,673,685 - -1.3 1,673,783 + +0.2 1,674,482 - -0.7 1,674,544 - Shewana3_1444 0.25 +4.7 1,674,679 - Shewana3_1444 0.59 +0.6 1,675,108 - +0.8 1,675,240 - -1.7 1,675,422 - +0.4 1,675,477 + Shewana3_1446 0.10 -0.5 1,675,556 - Shewana3_1446 0.13 +0.8 1,675,670 + Shewana3_1446 0.16 +0.5 1,675,700 - Shewana3_1446 0.17 -2.2 1,675,700 - Shewana3_1446 0.17 +0.1
Or see this region's nucleotide sequence