Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1200 and Shewana3_1201 are separated by 68 nucleotides Shewana3_1201 and Shewana3_1202 are separated by 149 nucleotides Shewana3_1202 and Shewana3_1203 are separated by 179 nucleotides
Shewana3_1200: Shewana3_1200 - hypothetical protein (RefSeq), at 1,406,415 to 1,406,978
_1200
Shewana3_1201: Shewana3_1201 - translation initiation factor Sui1 (RefSeq), at 1,407,047 to 1,407,376
_1201
Shewana3_1202: Shewana3_1202 - hypothetical protein (RefSeq), at 1,407,526 to 1,407,840
_1202
Shewana3_1203: Shewana3_1203 - hypothetical protein (RefSeq), at 1,408,020 to 1,408,580
_1203
Position (kb)
1407
1408 Strain fitness (log2 ratio)
-1
0
1
2 at 1406.545 kb on - strand, within Shewana3_1200 at 1406.563 kb on - strand, within Shewana3_1200 at 1406.660 kb on - strand, within Shewana3_1200 at 1406.726 kb on - strand, within Shewana3_1200 at 1406.997 kb on - strand at 1407.195 kb on - strand, within Shewana3_1201 at 1407.244 kb on - strand, within Shewana3_1201 at 1407.244 kb on - strand, within Shewana3_1201 at 1407.501 kb on + strand at 1407.678 kb on - strand, within Shewana3_1202 at 1407.751 kb on - strand, within Shewana3_1202 at 1407.758 kb on - strand, within Shewana3_1202 at 1407.916 kb on - strand at 1407.939 kb on + strand at 1408.118 kb on + strand, within Shewana3_1203 at 1408.118 kb on + strand, within Shewana3_1203 at 1408.125 kb on + strand, within Shewana3_1203 at 1408.126 kb on - strand, within Shewana3_1203 at 1408.126 kb on - strand, within Shewana3_1203 at 1408.229 kb on + strand, within Shewana3_1203 at 1408.230 kb on + strand, within Shewana3_1203 at 1408.353 kb on + strand, within Shewana3_1203 at 1408.353 kb on + strand, within Shewana3_1203 at 1408.353 kb on + strand, within Shewana3_1203 at 1408.361 kb on - strand, within Shewana3_1203 at 1408.361 kb on - strand, within Shewana3_1203 at 1408.786 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 1,406,545 - Shewana3_1200 0.23 +0.1 1,406,563 - Shewana3_1200 0.26 -1.7 1,406,660 - Shewana3_1200 0.43 +2.7 1,406,726 - Shewana3_1200 0.55 -1.6 1,406,997 - -0.1 1,407,195 - Shewana3_1201 0.45 -0.2 1,407,244 - Shewana3_1201 0.60 +0.1 1,407,244 - Shewana3_1201 0.60 +0.2 1,407,501 + +0.4 1,407,678 - Shewana3_1202 0.48 -0.1 1,407,751 - Shewana3_1202 0.71 +1.2 1,407,758 - Shewana3_1202 0.74 +0.7 1,407,916 - +0.4 1,407,939 + -0.7 1,408,118 + Shewana3_1203 0.17 -0.0 1,408,118 + Shewana3_1203 0.17 +1.3 1,408,125 + Shewana3_1203 0.19 +0.6 1,408,126 - Shewana3_1203 0.19 -0.9 1,408,126 - Shewana3_1203 0.19 +0.0 1,408,229 + Shewana3_1203 0.37 -1.7 1,408,230 + Shewana3_1203 0.37 +1.1 1,408,353 + Shewana3_1203 0.59 +0.7 1,408,353 + Shewana3_1203 0.59 -0.9 1,408,353 + Shewana3_1203 0.59 -0.6 1,408,361 - Shewana3_1203 0.61 +1.9 1,408,361 - Shewana3_1203 0.61 +2.7 1,408,786 + +1.9
Or see this region's nucleotide sequence