Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0950 and Shewana3_0951 are separated by 218 nucleotides Shewana3_0951 and Shewana3_0952 are separated by 918 nucleotides
Shewana3_0950: Shewana3_0950 - M20C family Xaa-His dipeptidase (RefSeq), at 1,111,290 to 1,112,753
_0950
Shewana3_0951: Shewana3_0951 - dihydrofolate reductase (RefSeq), at 1,112,972 to 1,114,510
_0951
Shewana3_0952: Shewana3_0952 - TonB-dependent siderophore receptor (RefSeq), at 1,115,429 to 1,117,618
_0952
Position (kb)
1112
1113
1114
1115 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1112.097 kb on - strand, within Shewana3_0950 at 1112.184 kb on - strand, within Shewana3_0950 at 1112.251 kb on + strand, within Shewana3_0950 at 1112.259 kb on - strand, within Shewana3_0950 at 1112.299 kb on - strand, within Shewana3_0950 at 1112.393 kb on - strand, within Shewana3_0950 at 1112.393 kb on - strand, within Shewana3_0950 at 1112.518 kb on + strand, within Shewana3_0950 at 1112.736 kb on - strand at 1112.778 kb on - strand at 1112.843 kb on + strand at 1113.039 kb on + strand at 1113.143 kb on + strand, within Shewana3_0951 at 1113.303 kb on - strand, within Shewana3_0951 at 1113.381 kb on + strand, within Shewana3_0951 at 1113.389 kb on - strand, within Shewana3_0951 at 1113.389 kb on - strand, within Shewana3_0951 at 1113.389 kb on - strand, within Shewana3_0951 at 1113.733 kb on - strand, within Shewana3_0951 at 1114.035 kb on - strand, within Shewana3_0951 at 1114.078 kb on + strand, within Shewana3_0951 at 1114.111 kb on + strand, within Shewana3_0951 at 1114.879 kb on + strand at 1114.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 1,112,097 - Shewana3_0950 0.55 +1.4 1,112,184 - Shewana3_0950 0.61 +0.1 1,112,251 + Shewana3_0950 0.66 -0.5 1,112,259 - Shewana3_0950 0.66 +2.0 1,112,299 - Shewana3_0950 0.69 -0.5 1,112,393 - Shewana3_0950 0.75 +0.7 1,112,393 - Shewana3_0950 0.75 +0.6 1,112,518 + Shewana3_0950 0.84 -0.9 1,112,736 - -1.2 1,112,778 - -0.7 1,112,843 + -0.7 1,113,039 + -0.2 1,113,143 + Shewana3_0951 0.11 +0.7 1,113,303 - Shewana3_0951 0.22 +1.5 1,113,381 + Shewana3_0951 0.27 +0.2 1,113,389 - Shewana3_0951 0.27 +1.9 1,113,389 - Shewana3_0951 0.27 -2.8 1,113,389 - Shewana3_0951 0.27 +0.1 1,113,733 - Shewana3_0951 0.49 -0.3 1,114,035 - Shewana3_0951 0.69 +0.4 1,114,078 + Shewana3_0951 0.72 +0.6 1,114,111 + Shewana3_0951 0.74 -0.1 1,114,879 + +0.1 1,114,879 + +0.7
Or see this region's nucleotide sequence