Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0951

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0950 and Shewana3_0951 are separated by 218 nucleotidesShewana3_0951 and Shewana3_0952 are separated by 918 nucleotides Shewana3_0950: Shewana3_0950 - M20C family Xaa-His dipeptidase (RefSeq), at 1,111,290 to 1,112,753 _0950 Shewana3_0951: Shewana3_0951 - dihydrofolate reductase (RefSeq), at 1,112,972 to 1,114,510 _0951 Shewana3_0952: Shewana3_0952 - TonB-dependent siderophore receptor (RefSeq), at 1,115,429 to 1,117,618 _0952 Position (kb) 1112 1113 1114 1115Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1112.097 kb on - strand, within Shewana3_0950at 1112.184 kb on - strand, within Shewana3_0950at 1112.251 kb on + strand, within Shewana3_0950at 1112.259 kb on - strand, within Shewana3_0950at 1112.299 kb on - strand, within Shewana3_0950at 1112.393 kb on - strand, within Shewana3_0950at 1112.393 kb on - strand, within Shewana3_0950at 1112.518 kb on + strand, within Shewana3_0950at 1112.736 kb on - strandat 1112.778 kb on - strandat 1112.843 kb on + strandat 1113.039 kb on + strandat 1113.143 kb on + strand, within Shewana3_0951at 1113.303 kb on - strand, within Shewana3_0951at 1113.381 kb on + strand, within Shewana3_0951at 1113.389 kb on - strand, within Shewana3_0951at 1113.389 kb on - strand, within Shewana3_0951at 1113.389 kb on - strand, within Shewana3_0951at 1113.733 kb on - strand, within Shewana3_0951at 1114.035 kb on - strand, within Shewana3_0951at 1114.078 kb on + strand, within Shewana3_0951at 1114.111 kb on + strand, within Shewana3_0951at 1114.879 kb on + strandat 1114.879 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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1,112,097 - Shewana3_0950 0.55 +1.4
1,112,184 - Shewana3_0950 0.61 +0.1
1,112,251 + Shewana3_0950 0.66 -0.5
1,112,259 - Shewana3_0950 0.66 +2.0
1,112,299 - Shewana3_0950 0.69 -0.5
1,112,393 - Shewana3_0950 0.75 +0.7
1,112,393 - Shewana3_0950 0.75 +0.6
1,112,518 + Shewana3_0950 0.84 -0.9
1,112,736 - -1.2
1,112,778 - -0.7
1,112,843 + -0.7
1,113,039 + -0.2
1,113,143 + Shewana3_0951 0.11 +0.7
1,113,303 - Shewana3_0951 0.22 +1.5
1,113,381 + Shewana3_0951 0.27 +0.2
1,113,389 - Shewana3_0951 0.27 +1.9
1,113,389 - Shewana3_0951 0.27 -2.8
1,113,389 - Shewana3_0951 0.27 +0.1
1,113,733 - Shewana3_0951 0.49 -0.3
1,114,035 - Shewana3_0951 0.69 +0.4
1,114,078 + Shewana3_0951 0.72 +0.6
1,114,111 + Shewana3_0951 0.74 -0.1
1,114,879 + +0.1
1,114,879 + +0.7

Or see this region's nucleotide sequence