Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0922

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0920 and Shewana3_0921 overlap by 1 nucleotidesShewana3_0921 and Shewana3_0922 are separated by 55 nucleotidesShewana3_0922 and Shewana3_0923 are separated by 84 nucleotides Shewana3_0920: Shewana3_0920 - FMN-binding domain-containing protein (RefSeq), at 1,075,884 to 1,076,435 _0920 Shewana3_0921: Shewana3_0921 - ApbE family protein, putative (RefSeq), at 1,076,435 to 1,077,283 _0921 Shewana3_0922: Shewana3_0922 - hypothetical protein (RefSeq), at 1,077,339 to 1,077,806 _0922 Shewana3_0923: Shewana3_0923 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,077,891 to 1,079,522 _0923 Position (kb) 1077 1078Strain fitness (log2 ratio) -3 -2 -1 0 1at 1076.423 kb on + strandat 1076.447 kb on + strandat 1076.600 kb on - strand, within Shewana3_0921at 1076.695 kb on + strand, within Shewana3_0921at 1076.703 kb on + strand, within Shewana3_0921at 1076.717 kb on + strand, within Shewana3_0921at 1076.717 kb on + strand, within Shewana3_0921at 1076.725 kb on - strand, within Shewana3_0921at 1076.882 kb on + strand, within Shewana3_0921at 1077.428 kb on + strand, within Shewana3_0922at 1077.491 kb on - strand, within Shewana3_0922at 1077.491 kb on - strand, within Shewana3_0922at 1077.507 kb on - strand, within Shewana3_0922at 1077.526 kb on + strand, within Shewana3_0922at 1077.560 kb on - strand, within Shewana3_0922at 1077.728 kb on - strand, within Shewana3_0922at 1077.789 kb on + strandat 1077.898 kb on + strandat 1078.247 kb on + strand, within Shewana3_0923at 1078.306 kb on - strand, within Shewana3_0923at 1078.306 kb on - strand, within Shewana3_0923at 1078.586 kb on + strand, within Shewana3_0923at 1078.594 kb on - strand, within Shewana3_0923at 1078.768 kb on + strand, within Shewana3_0923at 1078.800 kb on + strand, within Shewana3_0923

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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1,076,423 + +1.3
1,076,447 + -1.7
1,076,600 - Shewana3_0921 0.19 -1.4
1,076,695 + Shewana3_0921 0.31 +0.3
1,076,703 + Shewana3_0921 0.32 +0.7
1,076,717 + Shewana3_0921 0.33 +0.3
1,076,717 + Shewana3_0921 0.33 +0.0
1,076,725 - Shewana3_0921 0.34 -0.6
1,076,882 + Shewana3_0921 0.53 -3.4
1,077,428 + Shewana3_0922 0.19 +1.7
1,077,491 - Shewana3_0922 0.32 -1.5
1,077,491 - Shewana3_0922 0.32 +0.8
1,077,507 - Shewana3_0922 0.36 +1.3
1,077,526 + Shewana3_0922 0.40 -0.4
1,077,560 - Shewana3_0922 0.47 +0.4
1,077,728 - Shewana3_0922 0.83 -0.1
1,077,789 + +0.8
1,077,898 + -0.9
1,078,247 + Shewana3_0923 0.22 -0.1
1,078,306 - Shewana3_0923 0.25 -0.9
1,078,306 - Shewana3_0923 0.25 +1.3
1,078,586 + Shewana3_0923 0.43 +1.6
1,078,594 - Shewana3_0923 0.43 +0.4
1,078,768 + Shewana3_0923 0.54 -1.2
1,078,800 + Shewana3_0923 0.56 -0.2

Or see this region's nucleotide sequence