Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0916

Experiment: Glycine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0915 and Shewana3_0916 are separated by 162 nucleotidesShewana3_0916 and Shewana3_0917 are separated by 11 nucleotidesShewana3_0917 and Shewana3_0918 are separated by 185 nucleotides Shewana3_0915: Shewana3_0915 - OmpA/MotB domain-containing protein (RefSeq), at 1,069,803 to 1,071,260 _0915 Shewana3_0916: Shewana3_0916 - pseudouridine synthase, Rsu (RefSeq), at 1,071,423 to 1,072,133 _0916 Shewana3_0917: Shewana3_0917 - hypothetical protein (RefSeq), at 1,072,145 to 1,072,837 _0917 Shewana3_0918: Shewana3_0918 - Na+/H+ antiporter NhaC (RefSeq), at 1,073,023 to 1,074,360 _0918 Position (kb) 1071 1072 1073Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1070.436 kb on - strand, within Shewana3_0915at 1070.621 kb on + strand, within Shewana3_0915at 1070.675 kb on - strand, within Shewana3_0915at 1070.689 kb on - strand, within Shewana3_0915at 1070.731 kb on + strand, within Shewana3_0915at 1070.977 kb on - strand, within Shewana3_0915at 1070.989 kb on - strand, within Shewana3_0915at 1071.168 kb on + strandat 1071.171 kb on + strandat 1071.173 kb on + strandat 1071.173 kb on + strandat 1071.181 kb on - strandat 1071.313 kb on - strandat 1071.313 kb on - strandat 1071.314 kb on + strandat 1071.466 kb on - strandat 1071.503 kb on + strand, within Shewana3_0916at 1071.504 kb on + strand, within Shewana3_0916at 1071.629 kb on - strand, within Shewana3_0916at 1071.645 kb on - strand, within Shewana3_0916at 1071.702 kb on + strand, within Shewana3_0916at 1071.720 kb on - strand, within Shewana3_0916at 1071.733 kb on + strand, within Shewana3_0916at 1071.756 kb on - strand, within Shewana3_0916at 1071.835 kb on + strand, within Shewana3_0916at 1072.145 kb on - strandat 1072.332 kb on - strand, within Shewana3_0917at 1072.381 kb on + strand, within Shewana3_0917at 1072.391 kb on + strand, within Shewana3_0917at 1072.460 kb on + strand, within Shewana3_0917at 1072.554 kb on - strand, within Shewana3_0917at 1072.586 kb on - strand, within Shewana3_0917at 1072.645 kb on - strand, within Shewana3_0917at 1072.689 kb on + strand, within Shewana3_0917at 1072.736 kb on - strand, within Shewana3_0917at 1072.747 kb on + strand, within Shewana3_0917at 1072.884 kb on + strandat 1072.892 kb on - strandat 1072.981 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
remove
1,070,436 - Shewana3_0915 0.43 -0.4
1,070,621 + Shewana3_0915 0.56 +0.2
1,070,675 - Shewana3_0915 0.60 +0.1
1,070,689 - Shewana3_0915 0.61 +0.7
1,070,731 + Shewana3_0915 0.64 -2.3
1,070,977 - Shewana3_0915 0.81 -0.1
1,070,989 - Shewana3_0915 0.81 +0.3
1,071,168 + -3.0
1,071,171 + +0.6
1,071,173 + +0.1
1,071,173 + +0.4
1,071,181 - +0.5
1,071,313 - -0.9
1,071,313 - +0.6
1,071,314 + -1.9
1,071,466 - -1.1
1,071,503 + Shewana3_0916 0.11 +1.5
1,071,504 + Shewana3_0916 0.11 -1.2
1,071,629 - Shewana3_0916 0.29 +0.6
1,071,645 - Shewana3_0916 0.31 -1.2
1,071,702 + Shewana3_0916 0.39 -0.4
1,071,720 - Shewana3_0916 0.42 +0.8
1,071,733 + Shewana3_0916 0.44 +2.4
1,071,756 - Shewana3_0916 0.47 -1.5
1,071,835 + Shewana3_0916 0.58 +2.3
1,072,145 - +1.1
1,072,332 - Shewana3_0917 0.27 +1.5
1,072,381 + Shewana3_0917 0.34 +1.1
1,072,391 + Shewana3_0917 0.35 -0.4
1,072,460 + Shewana3_0917 0.45 -0.4
1,072,554 - Shewana3_0917 0.59 -2.3
1,072,586 - Shewana3_0917 0.64 -1.6
1,072,645 - Shewana3_0917 0.72 +1.4
1,072,689 + Shewana3_0917 0.78 +0.0
1,072,736 - Shewana3_0917 0.85 +0.2
1,072,747 + Shewana3_0917 0.87 +0.5
1,072,884 + -0.5
1,072,892 - +0.5
1,072,981 - +0.4

Or see this region's nucleotide sequence