Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0915 and Shewana3_0916 are separated by 162 nucleotides Shewana3_0916 and Shewana3_0917 are separated by 11 nucleotides Shewana3_0917 and Shewana3_0918 are separated by 185 nucleotides
Shewana3_0915: Shewana3_0915 - OmpA/MotB domain-containing protein (RefSeq), at 1,069,803 to 1,071,260
_0915
Shewana3_0916: Shewana3_0916 - pseudouridine synthase, Rsu (RefSeq), at 1,071,423 to 1,072,133
_0916
Shewana3_0917: Shewana3_0917 - hypothetical protein (RefSeq), at 1,072,145 to 1,072,837
_0917
Shewana3_0918: Shewana3_0918 - Na+/H+ antiporter NhaC (RefSeq), at 1,073,023 to 1,074,360
_0918
Position (kb)
1071
1072
1073 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1070.436 kb on - strand, within Shewana3_0915 at 1070.621 kb on + strand, within Shewana3_0915 at 1070.675 kb on - strand, within Shewana3_0915 at 1070.689 kb on - strand, within Shewana3_0915 at 1070.731 kb on + strand, within Shewana3_0915 at 1070.977 kb on - strand, within Shewana3_0915 at 1070.989 kb on - strand, within Shewana3_0915 at 1071.168 kb on + strand at 1071.171 kb on + strand at 1071.173 kb on + strand at 1071.173 kb on + strand at 1071.181 kb on - strand at 1071.313 kb on - strand at 1071.313 kb on - strand at 1071.314 kb on + strand at 1071.466 kb on - strand at 1071.503 kb on + strand, within Shewana3_0916 at 1071.504 kb on + strand, within Shewana3_0916 at 1071.629 kb on - strand, within Shewana3_0916 at 1071.645 kb on - strand, within Shewana3_0916 at 1071.702 kb on + strand, within Shewana3_0916 at 1071.720 kb on - strand, within Shewana3_0916 at 1071.733 kb on + strand, within Shewana3_0916 at 1071.756 kb on - strand, within Shewana3_0916 at 1071.835 kb on + strand, within Shewana3_0916 at 1072.145 kb on - strand at 1072.332 kb on - strand, within Shewana3_0917 at 1072.381 kb on + strand, within Shewana3_0917 at 1072.391 kb on + strand, within Shewana3_0917 at 1072.460 kb on + strand, within Shewana3_0917 at 1072.554 kb on - strand, within Shewana3_0917 at 1072.586 kb on - strand, within Shewana3_0917 at 1072.645 kb on - strand, within Shewana3_0917 at 1072.689 kb on + strand, within Shewana3_0917 at 1072.736 kb on - strand, within Shewana3_0917 at 1072.747 kb on + strand, within Shewana3_0917 at 1072.884 kb on + strand at 1072.892 kb on - strand at 1072.981 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 1,070,436 - Shewana3_0915 0.43 -0.4 1,070,621 + Shewana3_0915 0.56 +0.2 1,070,675 - Shewana3_0915 0.60 +0.1 1,070,689 - Shewana3_0915 0.61 +0.7 1,070,731 + Shewana3_0915 0.64 -2.3 1,070,977 - Shewana3_0915 0.81 -0.1 1,070,989 - Shewana3_0915 0.81 +0.3 1,071,168 + -3.0 1,071,171 + +0.6 1,071,173 + +0.1 1,071,173 + +0.4 1,071,181 - +0.5 1,071,313 - -0.9 1,071,313 - +0.6 1,071,314 + -1.9 1,071,466 - -1.1 1,071,503 + Shewana3_0916 0.11 +1.5 1,071,504 + Shewana3_0916 0.11 -1.2 1,071,629 - Shewana3_0916 0.29 +0.6 1,071,645 - Shewana3_0916 0.31 -1.2 1,071,702 + Shewana3_0916 0.39 -0.4 1,071,720 - Shewana3_0916 0.42 +0.8 1,071,733 + Shewana3_0916 0.44 +2.4 1,071,756 - Shewana3_0916 0.47 -1.5 1,071,835 + Shewana3_0916 0.58 +2.3 1,072,145 - +1.1 1,072,332 - Shewana3_0917 0.27 +1.5 1,072,381 + Shewana3_0917 0.34 +1.1 1,072,391 + Shewana3_0917 0.35 -0.4 1,072,460 + Shewana3_0917 0.45 -0.4 1,072,554 - Shewana3_0917 0.59 -2.3 1,072,586 - Shewana3_0917 0.64 -1.6 1,072,645 - Shewana3_0917 0.72 +1.4 1,072,689 + Shewana3_0917 0.78 +0.0 1,072,736 - Shewana3_0917 0.85 +0.2 1,072,747 + Shewana3_0917 0.87 +0.5 1,072,884 + -0.5 1,072,892 - +0.5 1,072,981 - +0.4
Or see this region's nucleotide sequence