Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0829 and Shewana3_0830 are separated by 4 nucleotides Shewana3_0830 and Shewana3_0831 are separated by 15 nucleotides
Shewana3_0829: Shewana3_0829 - spermidine synthase (RefSeq), at 958,991 to 960,724
_0829
Shewana3_0830: Shewana3_0830 - hypothetical protein (RefSeq), at 960,729 to 961,628
_0830
Shewana3_0831: Shewana3_0831 - hypothetical protein (RefSeq), at 961,644 to 962,621
_0831
Position (kb) 960
961
962 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 959.743 kb on + strand, within Shewana3_0829 at 960.072 kb on - strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.120 kb on - strand, within Shewana3_0829 at 960.180 kb on + strand, within Shewana3_0829 at 960.202 kb on - strand, within Shewana3_0829 at 960.202 kb on - strand, within Shewana3_0829 at 960.213 kb on + strand, within Shewana3_0829 at 960.421 kb on + strand, within Shewana3_0829 at 960.587 kb on - strand at 960.685 kb on - strand at 960.726 kb on + strand at 960.943 kb on + strand, within Shewana3_0830 at 961.188 kb on - strand, within Shewana3_0830 at 961.193 kb on - strand, within Shewana3_0830 at 961.332 kb on - strand, within Shewana3_0830 at 961.399 kb on + strand, within Shewana3_0830 at 961.402 kb on + strand, within Shewana3_0830 at 961.414 kb on + strand, within Shewana3_0830 at 961.424 kb on - strand, within Shewana3_0830 at 961.424 kb on - strand, within Shewana3_0830 at 961.498 kb on - strand, within Shewana3_0830 at 961.498 kb on - strand, within Shewana3_0830 at 961.775 kb on - strand, within Shewana3_0831 at 962.346 kb on + strand, within Shewana3_0831 at 962.369 kb on - strand, within Shewana3_0831 at 962.427 kb on + strand, within Shewana3_0831 at 962.439 kb on - strand, within Shewana3_0831 at 962.449 kb on + strand, within Shewana3_0831 at 962.467 kb on + strand, within Shewana3_0831 at 962.509 kb on - strand, within Shewana3_0831 at 962.539 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 959,743 + Shewana3_0829 0.43 -0.1 960,072 - Shewana3_0829 0.62 -0.3 960,112 + Shewana3_0829 0.65 -6.1 960,112 + Shewana3_0829 0.65 -1.3 960,112 + Shewana3_0829 0.65 +0.9 960,112 + Shewana3_0829 0.65 +0.4 960,112 + Shewana3_0829 0.65 -0.0 960,120 - Shewana3_0829 0.65 -0.0 960,180 + Shewana3_0829 0.69 +0.2 960,202 - Shewana3_0829 0.70 -1.1 960,202 - Shewana3_0829 0.70 +1.0 960,213 + Shewana3_0829 0.70 -0.0 960,421 + Shewana3_0829 0.82 -0.3 960,587 - -1.3 960,685 - +0.3 960,726 + +0.1 960,943 + Shewana3_0830 0.24 +0.3 961,188 - Shewana3_0830 0.51 +1.7 961,193 - Shewana3_0830 0.52 -0.5 961,332 - Shewana3_0830 0.67 +0.5 961,399 + Shewana3_0830 0.74 +1.6 961,402 + Shewana3_0830 0.75 +0.5 961,414 + Shewana3_0830 0.76 -1.0 961,424 - Shewana3_0830 0.77 +0.6 961,424 - Shewana3_0830 0.77 -0.7 961,498 - Shewana3_0830 0.85 +1.2 961,498 - Shewana3_0830 0.85 +0.7 961,775 - Shewana3_0831 0.13 +0.1 962,346 + Shewana3_0831 0.72 -3.1 962,369 - Shewana3_0831 0.74 -1.4 962,427 + Shewana3_0831 0.80 -0.3 962,439 - Shewana3_0831 0.81 -0.9 962,449 + Shewana3_0831 0.82 +0.6 962,467 + Shewana3_0831 0.84 +0.7 962,509 - Shewana3_0831 0.88 +0.1 962,539 - -2.2
Or see this region's nucleotide sequence