Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0818

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0817 and Shewana3_0818 are separated by 876 nucleotidesShewana3_0818 and Shewana3_0819 are separated by 434 nucleotides Shewana3_0817: Shewana3_0817 - hypothetical protein (RefSeq), at 945,076 to 945,810 _0817 Shewana3_0818: Shewana3_0818 - hypothetical protein (RefSeq), at 946,687 to 947,175 _0818 Shewana3_0819: Shewana3_0819 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 947,610 to 950,804 _0819 Position (kb) 946 947 948Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 945.901 kb on - strandat 945.963 kb on - strandat 946.012 kb on + strandat 946.274 kb on + strandat 946.299 kb on + strandat 946.299 kb on + strandat 946.299 kb on + strandat 946.319 kb on + strandat 946.319 kb on + strandat 946.544 kb on - strandat 946.591 kb on + strandat 946.591 kb on + strandat 946.726 kb on - strandat 946.809 kb on - strand, within Shewana3_0818at 946.877 kb on + strand, within Shewana3_0818at 946.877 kb on - strand, within Shewana3_0818at 946.959 kb on - strand, within Shewana3_0818at 947.158 kb on - strandat 947.163 kb on + strandat 947.182 kb on - strandat 947.294 kb on - strandat 947.354 kb on + strandat 947.471 kb on + strandat 947.471 kb on + strandat 947.699 kb on + strandat 947.777 kb on - strandat 947.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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945,901 - +5.2
945,963 - +0.8
946,012 + -0.0
946,274 + -0.7
946,299 + +0.5
946,299 + +0.3
946,299 + +0.4
946,319 + +0.5
946,319 + +0.2
946,544 - +0.2
946,591 + +0.7
946,591 + -1.0
946,726 - +0.5
946,809 - Shewana3_0818 0.25 +0.2
946,877 + Shewana3_0818 0.39 -2.6
946,877 - Shewana3_0818 0.39 +0.5
946,959 - Shewana3_0818 0.56 -0.3
947,158 - +0.5
947,163 + -1.5
947,182 - +0.7
947,294 - -1.5
947,354 + +3.1
947,471 + +0.3
947,471 + +0.3
947,699 + -1.5
947,777 - -0.0
947,842 - -2.2

Or see this region's nucleotide sequence