Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0733 and Shewana3_0734 are separated by 430 nucleotides Shewana3_0734 and Shewana3_0735 are separated by 416 nucleotides
Shewana3_0733: Shewana3_0733 - porin (RefSeq), at 851,205 to 852,284
_0733
Shewana3_0734: Shewana3_0734 - porin (RefSeq), at 852,715 to 853,779
_0734
Shewana3_0735: Shewana3_0735 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 854,196 to 855,029
_0735
Position (kb) 852
853
854 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 851.891 kb on + strand, within Shewana3_0733 at 852.153 kb on + strand, within Shewana3_0733 at 852.237 kb on - strand at 852.400 kb on - strand at 852.435 kb on + strand at 852.588 kb on + strand at 852.862 kb on - strand, within Shewana3_0734 at 852.912 kb on - strand, within Shewana3_0734 at 852.967 kb on - strand, within Shewana3_0734 at 853.112 kb on - strand, within Shewana3_0734 at 853.359 kb on - strand, within Shewana3_0734 at 853.409 kb on - strand, within Shewana3_0734 at 853.592 kb on + strand, within Shewana3_0734 at 853.846 kb on - strand at 853.851 kb on - strand at 853.851 kb on - strand at 853.859 kb on - strand at 854.042 kb on + strand at 854.122 kb on + strand at 854.132 kb on + strand at 854.132 kb on + strand at 854.132 kb on + strand at 854.132 kb on + strand at 854.132 kb on + strand at 854.153 kb on + strand at 854.198 kb on - strand at 854.245 kb on + strand at 854.245 kb on + strand at 854.542 kb on + strand, within Shewana3_0735 at 854.581 kb on + strand, within Shewana3_0735 at 854.675 kb on - strand, within Shewana3_0735
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 851,891 + Shewana3_0733 0.64 -0.2 852,153 + Shewana3_0733 0.88 -0.5 852,237 - +0.5 852,400 - -0.3 852,435 + +1.0 852,588 + +0.4 852,862 - Shewana3_0734 0.14 +0.6 852,912 - Shewana3_0734 0.18 +0.5 852,967 - Shewana3_0734 0.24 +1.0 853,112 - Shewana3_0734 0.37 +0.9 853,359 - Shewana3_0734 0.60 -0.3 853,409 - Shewana3_0734 0.65 -1.4 853,592 + Shewana3_0734 0.82 +0.3 853,846 - -1.2 853,851 - +0.4 853,851 - -0.5 853,859 - +0.7 854,042 + -4.3 854,122 + +1.9 854,132 + +0.2 854,132 + +0.7 854,132 + +0.5 854,132 + -0.8 854,132 + -0.0 854,153 + -1.0 854,198 - -1.7 854,245 + -2.7 854,245 + -2.1 854,542 + Shewana3_0735 0.41 +0.8 854,581 + Shewana3_0735 0.46 -1.5 854,675 - Shewana3_0735 0.57 -2.6
Or see this region's nucleotide sequence