Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0729

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0727 and Shewana3_0728 are separated by 15 nucleotidesShewana3_0728 and Shewana3_0729 are separated by 26 nucleotidesShewana3_0729 and Shewana3_0730 are separated by 56 nucleotides Shewana3_0727: Shewana3_0727 - hypothetical protein (RefSeq), at 843,684 to 844,136 _0727 Shewana3_0728: Shewana3_0728 - calcineurin phosphoesterase C-terminal domain-containing protein (RefSeq), at 844,152 to 844,991 _0728 Shewana3_0729: Shewana3_0729 - hypothetical protein (RefSeq), at 845,018 to 845,593 _0729 Shewana3_0730: Shewana3_0730 - DNA topoisomerase IV subunit B (RefSeq), at 845,650 to 847,536 _0730 Position (kb) 845 846Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 844.020 kb on + strand, within Shewana3_0727at 844.020 kb on + strand, within Shewana3_0727at 844.020 kb on + strand, within Shewana3_0727at 844.020 kb on + strand, within Shewana3_0727at 844.020 kb on + strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.078 kb on - strand, within Shewana3_0727at 844.532 kb on + strand, within Shewana3_0728at 844.598 kb on + strand, within Shewana3_0728at 844.598 kb on + strand, within Shewana3_0728at 844.606 kb on - strand, within Shewana3_0728at 844.606 kb on - strand, within Shewana3_0728at 844.648 kb on + strand, within Shewana3_0728at 844.685 kb on - strand, within Shewana3_0728at 844.744 kb on - strand, within Shewana3_0728at 844.749 kb on + strand, within Shewana3_0728at 844.751 kb on - strand, within Shewana3_0728at 844.756 kb on - strand, within Shewana3_0728at 844.927 kb on + strandat 845.023 kb on + strandat 845.083 kb on + strand, within Shewana3_0729at 845.091 kb on - strand, within Shewana3_0729at 845.091 kb on - strand, within Shewana3_0729at 845.276 kb on + strand, within Shewana3_0729at 845.301 kb on + strand, within Shewana3_0729at 845.320 kb on + strand, within Shewana3_0729at 845.341 kb on + strand, within Shewana3_0729at 845.470 kb on - strand, within Shewana3_0729at 845.490 kb on + strand, within Shewana3_0729

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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844,020 + Shewana3_0727 0.74 -4.8
844,020 + Shewana3_0727 0.74 -2.0
844,020 + Shewana3_0727 0.74 -1.0
844,020 + Shewana3_0727 0.74 +0.3
844,020 + Shewana3_0727 0.74 -0.8
844,028 - Shewana3_0727 0.76 -0.8
844,028 - Shewana3_0727 0.76 -1.0
844,028 - Shewana3_0727 0.76 -3.3
844,028 - Shewana3_0727 0.76 -1.0
844,028 - Shewana3_0727 0.76 -1.4
844,028 - Shewana3_0727 0.76 -1.3
844,028 - Shewana3_0727 0.76 -1.3
844,028 - Shewana3_0727 0.76 -4.1
844,078 - Shewana3_0727 0.87 -3.2
844,532 + Shewana3_0728 0.45 -3.5
844,598 + Shewana3_0728 0.53 -3.3
844,598 + Shewana3_0728 0.53 -3.3
844,606 - Shewana3_0728 0.54 -2.6
844,606 - Shewana3_0728 0.54 -3.0
844,648 + Shewana3_0728 0.59 -2.0
844,685 - Shewana3_0728 0.63 -2.2
844,744 - Shewana3_0728 0.70 -2.4
844,749 + Shewana3_0728 0.71 -2.9
844,751 - Shewana3_0728 0.71 -2.3
844,756 - Shewana3_0728 0.72 -3.9
844,927 + -3.5
845,023 + -1.8
845,083 + Shewana3_0729 0.11 -0.7
845,091 - Shewana3_0729 0.13 -1.1
845,091 - Shewana3_0729 0.13 -0.6
845,276 + Shewana3_0729 0.45 +0.3
845,301 + Shewana3_0729 0.49 -1.0
845,320 + Shewana3_0729 0.52 +0.2
845,341 + Shewana3_0729 0.56 +0.1
845,470 - Shewana3_0729 0.78 +0.5
845,490 + Shewana3_0729 0.82 -0.1

Or see this region's nucleotide sequence