Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt astD and Shewana3_0613 are separated by 164 nucleotides Shewana3_0613 and Shewana3_0614 are separated by 139 nucleotides
Shewana3_0612: astD - succinylglutamic semialdehyde dehydrogenase (RefSeq), at 717,250 to 718,713
astD
Shewana3_0613: Shewana3_0613 - hypothetical protein (RefSeq), at 718,878 to 719,681
_0613
Shewana3_0614: Shewana3_0614 - ATPase domain-containing protein (RefSeq), at 719,821 to 721,149
_0614
Position (kb) 718
719
720 Strain fitness (log2 ratio) -2
-1
0
1 at 717.971 kb on - strand, within astD at 718.041 kb on - strand, within astD at 718.074 kb on + strand, within astD at 718.074 kb on + strand, within astD at 718.095 kb on + strand, within astD at 718.143 kb on + strand, within astD at 718.169 kb on - strand, within astD at 718.169 kb on - strand, within astD at 718.325 kb on + strand, within astD at 718.447 kb on - strand, within astD at 718.972 kb on - strand, within Shewana3_0613 at 719.203 kb on + strand, within Shewana3_0613 at 719.299 kb on + strand, within Shewana3_0613 at 719.338 kb on + strand, within Shewana3_0613 at 719.366 kb on + strand, within Shewana3_0613 at 719.398 kb on - strand, within Shewana3_0613 at 719.407 kb on - strand, within Shewana3_0613 at 719.442 kb on + strand, within Shewana3_0613 at 719.456 kb on - strand, within Shewana3_0613 at 719.620 kb on - strand at 719.762 kb on + strand at 719.830 kb on + strand at 719.849 kb on + strand at 719.923 kb on + strand at 719.972 kb on - strand, within Shewana3_0614 at 720.008 kb on - strand, within Shewana3_0614 at 720.015 kb on + strand, within Shewana3_0614 at 720.023 kb on - strand, within Shewana3_0614 at 720.037 kb on + strand, within Shewana3_0614 at 720.037 kb on + strand, within Shewana3_0614 at 720.062 kb on - strand, within Shewana3_0614 at 720.150 kb on + strand, within Shewana3_0614 at 720.374 kb on + strand, within Shewana3_0614 at 720.498 kb on - strand, within Shewana3_0614 at 720.531 kb on + strand, within Shewana3_0614 at 720.539 kb on - strand, within Shewana3_0614
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 717,971 - astD Shewana3_0612 0.49 -0.3 718,041 - astD Shewana3_0612 0.54 -0.8 718,074 + astD Shewana3_0612 0.56 -0.8 718,074 + astD Shewana3_0612 0.56 -0.2 718,095 + astD Shewana3_0612 0.58 -0.3 718,143 + astD Shewana3_0612 0.61 -0.9 718,169 - astD Shewana3_0612 0.63 -1.7 718,169 - astD Shewana3_0612 0.63 -0.3 718,325 + astD Shewana3_0612 0.73 -2.0 718,447 - astD Shewana3_0612 0.82 -0.8 718,972 - Shewana3_0613 0.12 +0.2 719,203 + Shewana3_0613 0.40 -1.3 719,299 + Shewana3_0613 0.52 -0.9 719,338 + Shewana3_0613 0.57 +0.3 719,366 + Shewana3_0613 0.61 -1.4 719,398 - Shewana3_0613 0.65 -1.6 719,407 - Shewana3_0613 0.66 +1.7 719,442 + Shewana3_0613 0.70 -2.0 719,456 - Shewana3_0613 0.72 +0.3 719,620 - +0.3 719,762 + +0.2 719,830 + +0.2 719,849 + -0.5 719,923 + -1.7 719,972 - Shewana3_0614 0.11 -1.4 720,008 - Shewana3_0614 0.14 +0.4 720,015 + Shewana3_0614 0.15 +0.3 720,023 - Shewana3_0614 0.15 -1.1 720,037 + Shewana3_0614 0.16 -0.4 720,037 + Shewana3_0614 0.16 +0.4 720,062 - Shewana3_0614 0.18 -0.2 720,150 + Shewana3_0614 0.25 -0.7 720,374 + Shewana3_0614 0.42 -0.9 720,498 - Shewana3_0614 0.51 +0.0 720,531 + Shewana3_0614 0.53 +0.1 720,539 - Shewana3_0614 0.54 +0.2
Or see this region's nucleotide sequence