Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0608 and Shewana3_0609 are separated by 55 nucleotides Shewana3_0609 and argD are separated by 308 nucleotides
Shewana3_0608: Shewana3_0608 - putative signal transduction protein (RefSeq), at 712,455 to 713,600
_0608
Shewana3_0609: Shewana3_0609 - alpha/beta hydrolase domain-containing protein (RefSeq), at 713,656 to 714,567
_0609
Shewana3_0610: argD - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq), at 714,876 to 716,093
argD
Position (kb) 713
714
715 Strain fitness (log2 ratio) -2
-1
0
1 at 712.797 kb on - strand, within Shewana3_0608 at 712.838 kb on - strand, within Shewana3_0608 at 713.116 kb on - strand, within Shewana3_0608 at 713.124 kb on + strand, within Shewana3_0608 at 713.379 kb on - strand, within Shewana3_0608 at 713.431 kb on - strand, within Shewana3_0608 at 713.458 kb on - strand, within Shewana3_0608 at 713.561 kb on + strand at 713.594 kb on + strand at 713.842 kb on - strand, within Shewana3_0609 at 714.194 kb on - strand, within Shewana3_0609 at 714.287 kb on + strand, within Shewana3_0609 at 714.673 kb on - strand at 714.784 kb on + strand at 715.563 kb on + strand, within argD
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 712,797 - Shewana3_0608 0.30 +0.2 712,838 - Shewana3_0608 0.33 +0.1 713,116 - Shewana3_0608 0.58 -0.2 713,124 + Shewana3_0608 0.58 -0.3 713,379 - Shewana3_0608 0.81 -1.1 713,431 - Shewana3_0608 0.85 +0.8 713,458 - Shewana3_0608 0.88 +1.3 713,561 + +0.5 713,594 + +0.9 713,842 - Shewana3_0609 0.20 -1.3 714,194 - Shewana3_0609 0.59 -1.6 714,287 + Shewana3_0609 0.69 -0.3 714,673 - +0.9 714,784 + -0.4 715,563 + argD Shewana3_0610 0.56 -2.2
Or see this region's nucleotide sequence