Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0533 and Shewana3_0534 are separated by 65 nucleotides Shewana3_0534 and Shewana3_0535 are separated by 9 nucleotides
Shewana3_0533: Shewana3_0533 - bile acid:sodium symporter (RefSeq), at 626,796 to 627,815
_0533
Shewana3_0534: Shewana3_0534 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 627,881 to 628,894
_0534
Shewana3_0535: Shewana3_0535 - major facilitator transporter (RefSeq), at 628,904 to 630,172
_0535
Position (kb) 627
628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 626.964 kb on - strand, within Shewana3_0533 at 627.226 kb on + strand, within Shewana3_0533 at 627.779 kb on - strand at 627.932 kb on - strand at 628.165 kb on - strand, within Shewana3_0534 at 628.172 kb on - strand, within Shewana3_0534 at 628.299 kb on - strand, within Shewana3_0534 at 628.407 kb on + strand, within Shewana3_0534 at 628.546 kb on + strand, within Shewana3_0534 at 628.552 kb on + strand, within Shewana3_0534 at 628.654 kb on - strand, within Shewana3_0534 at 628.724 kb on - strand, within Shewana3_0534 at 628.798 kb on + strand at 628.834 kb on - strand at 628.851 kb on - strand at 629.488 kb on + strand, within Shewana3_0535 at 629.644 kb on + strand, within Shewana3_0535 at 629.735 kb on + strand, within Shewana3_0535 at 629.742 kb on + strand, within Shewana3_0535 at 629.775 kb on - strand at 629.816 kb on + strand, within Shewana3_0535
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 626,964 - Shewana3_0533 0.16 +1.1 627,226 + Shewana3_0533 0.42 +0.1 627,779 - +0.5 627,932 - -3.1 628,165 - Shewana3_0534 0.28 +0.6 628,172 - Shewana3_0534 0.29 +0.7 628,299 - Shewana3_0534 0.41 +0.3 628,407 + Shewana3_0534 0.52 +0.0 628,546 + Shewana3_0534 0.66 +0.1 628,552 + Shewana3_0534 0.66 +1.1 628,654 - Shewana3_0534 0.76 -0.6 628,724 - Shewana3_0534 0.83 +0.8 628,798 + +0.6 628,834 - +0.2 628,851 - -1.6 629,488 + Shewana3_0535 0.46 -0.9 629,644 + Shewana3_0535 0.58 -1.2 629,735 + Shewana3_0535 0.65 +0.1 629,742 + Shewana3_0535 0.66 +0.8 629,775 - -0.8 629,816 + Shewana3_0535 0.72 -0.6
Or see this region's nucleotide sequence