Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0531

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0530 and Shewana3_0531 are separated by 99 nucleotidesShewana3_0531 and Shewana3_0532 are separated by 500 nucleotidesShewana3_0532 and Shewana3_0533 are separated by 40 nucleotides Shewana3_0530: Shewana3_0530 - LysR family transcriptional regulator (RefSeq), at 624,333 to 625,199 _0530 Shewana3_0531: Shewana3_0531 - lysine exporter protein LysE/YggA (RefSeq), at 625,299 to 625,910 _0531 Shewana3_0532: Shewana3_0532 - ArsR family transcriptional regulator (RefSeq), at 626,411 to 626,755 _0532 Shewana3_0533: Shewana3_0533 - bile acid:sodium symporter (RefSeq), at 626,796 to 627,815 _0533 Position (kb) 625 626Strain fitness (log2 ratio) -2 -1 0 1at 624.330 kb on + strandat 624.330 kb on + strandat 624.330 kb on + strandat 624.330 kb on + strandat 624.331 kb on + strandat 624.340 kb on + strandat 624.340 kb on + strandat 624.340 kb on + strandat 624.348 kb on - strandat 624.348 kb on - strandat 624.348 kb on - strandat 624.368 kb on + strandat 624.376 kb on - strandat 624.376 kb on - strandat 624.376 kb on - strandat 624.376 kb on - strandat 624.435 kb on + strand, within Shewana3_0530at 624.659 kb on + strand, within Shewana3_0530at 624.923 kb on + strand, within Shewana3_0530at 624.956 kb on + strand, within Shewana3_0530at 625.034 kb on + strand, within Shewana3_0530at 625.043 kb on - strand, within Shewana3_0530at 625.283 kb on + strandat 625.304 kb on - strandat 625.339 kb on + strandat 625.340 kb on + strandat 625.340 kb on + strandat 625.348 kb on - strandat 625.473 kb on + strand, within Shewana3_0531at 625.543 kb on + strand, within Shewana3_0531at 625.565 kb on - strand, within Shewana3_0531at 625.761 kb on + strand, within Shewana3_0531at 625.769 kb on - strand, within Shewana3_0531at 625.769 kb on - strand, within Shewana3_0531at 625.769 kb on - strand, within Shewana3_0531at 625.771 kb on + strand, within Shewana3_0531at 625.771 kb on + strand, within Shewana3_0531at 625.796 kb on - strand, within Shewana3_0531at 625.808 kb on + strand, within Shewana3_0531at 625.854 kb on - strandat 625.856 kb on + strandat 625.856 kb on + strandat 625.856 kb on + strandat 625.856 kb on + strandat 626.033 kb on + strandat 626.052 kb on + strandat 626.053 kb on - strandat 626.107 kb on - strandat 626.217 kb on - strandat 626.455 kb on + strand, within Shewana3_0532at 626.463 kb on - strand, within Shewana3_0532at 626.535 kb on - strand, within Shewana3_0532at 626.672 kb on - strand, within Shewana3_0532at 626.736 kb on - strandat 626.827 kb on + strandat 626.848 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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624,330 + -1.0
624,330 + +0.2
624,330 + +0.6
624,330 + +0.2
624,331 + +1.3
624,340 + +0.1
624,340 + -2.0
624,340 + -1.0
624,348 - +0.2
624,348 - +1.2
624,348 - -0.0
624,368 + -0.8
624,376 - +1.0
624,376 - -0.5
624,376 - -2.1
624,376 - -0.7
624,435 + Shewana3_0530 0.12 -0.3
624,659 + Shewana3_0530 0.38 -1.0
624,923 + Shewana3_0530 0.68 +0.0
624,956 + Shewana3_0530 0.72 +0.4
625,034 + Shewana3_0530 0.81 +0.3
625,043 - Shewana3_0530 0.82 -1.9
625,283 + +0.5
625,304 - +1.2
625,339 + +0.3
625,340 + +0.3
625,340 + +0.1
625,348 - +0.5
625,473 + Shewana3_0531 0.28 -1.6
625,543 + Shewana3_0531 0.40 +0.6
625,565 - Shewana3_0531 0.43 -0.2
625,761 + Shewana3_0531 0.75 +0.1
625,769 - Shewana3_0531 0.77 +0.5
625,769 - Shewana3_0531 0.77 -2.2
625,769 - Shewana3_0531 0.77 +0.3
625,771 + Shewana3_0531 0.77 -0.6
625,771 + Shewana3_0531 0.77 +0.2
625,796 - Shewana3_0531 0.81 -2.7
625,808 + Shewana3_0531 0.83 -0.5
625,854 - +0.8
625,856 + +0.5
625,856 + +1.1
625,856 + +0.1
625,856 + -0.8
626,033 + +0.2
626,052 + +0.6
626,053 - -1.1
626,107 - +1.0
626,217 - +0.1
626,455 + Shewana3_0532 0.13 +0.4
626,463 - Shewana3_0532 0.15 -0.5
626,535 - Shewana3_0532 0.36 +1.5
626,672 - Shewana3_0532 0.76 -1.5
626,736 - -0.6
626,827 + +0.8
626,848 + -1.0

Or see this region's nucleotide sequence