Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0522 and Shewana3_0523 are separated by 13 nucleotides Shewana3_0523 and Shewana3_0524 are separated by 126 nucleotides Shewana3_0524 and Shewana3_0525 are separated by 43 nucleotides
Shewana3_0522: Shewana3_0522 - secretion protein HlyD family protein (RefSeq), at 612,889 to 613,944
_0522
Shewana3_0523: Shewana3_0523 - EmrB/QacA family drug resistance transporter (RefSeq), at 613,958 to 615,565
_0523
Shewana3_0524: Shewana3_0524 - GCN5-related N-acetyltransferase (RefSeq), at 615,692 to 616,165
_0524
Shewana3_0525: Shewana3_0525 - antibiotic biosynthesis monooxygenase (RefSeq), at 616,209 to 616,535
_0525
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -2
-1
0
1 at 613.083 kb on + strand, within Shewana3_0522 at 613.163 kb on + strand, within Shewana3_0522 at 613.287 kb on - strand, within Shewana3_0522 at 613.287 kb on - strand, within Shewana3_0522 at 613.326 kb on + strand, within Shewana3_0522 at 613.359 kb on - strand, within Shewana3_0522 at 613.391 kb on - strand, within Shewana3_0522 at 613.454 kb on - strand, within Shewana3_0522 at 613.529 kb on + strand, within Shewana3_0522 at 613.556 kb on - strand, within Shewana3_0522 at 613.591 kb on - strand, within Shewana3_0522 at 613.616 kb on - strand, within Shewana3_0522 at 613.618 kb on + strand, within Shewana3_0522 at 613.626 kb on - strand, within Shewana3_0522 at 613.683 kb on + strand, within Shewana3_0522 at 613.686 kb on - strand, within Shewana3_0522 at 613.812 kb on + strand, within Shewana3_0522 at 613.812 kb on + strand, within Shewana3_0522 at 613.898 kb on - strand at 613.992 kb on - strand at 613.998 kb on + strand at 614.006 kb on - strand at 614.006 kb on - strand at 614.128 kb on - strand, within Shewana3_0523 at 614.264 kb on + strand, within Shewana3_0523 at 614.277 kb on + strand, within Shewana3_0523 at 614.313 kb on - strand, within Shewana3_0523 at 614.315 kb on + strand, within Shewana3_0523 at 614.795 kb on - strand, within Shewana3_0523 at 614.865 kb on - strand, within Shewana3_0523 at 614.930 kb on + strand, within Shewana3_0523 at 615.099 kb on + strand, within Shewana3_0523 at 615.117 kb on + strand, within Shewana3_0523 at 615.125 kb on - strand, within Shewana3_0523 at 615.321 kb on + strand, within Shewana3_0523 at 615.327 kb on - strand, within Shewana3_0523 at 615.390 kb on - strand, within Shewana3_0523 at 615.403 kb on + strand, within Shewana3_0523 at 615.403 kb on + strand, within Shewana3_0523 at 615.411 kb on - strand at 615.439 kb on + strand at 615.573 kb on - strand at 615.590 kb on + strand at 615.639 kb on + strand at 615.746 kb on + strand, within Shewana3_0524 at 615.909 kb on - strand, within Shewana3_0524 at 615.936 kb on + strand, within Shewana3_0524 at 616.031 kb on - strand, within Shewana3_0524 at 616.092 kb on + strand, within Shewana3_0524 at 616.348 kb on + strand, within Shewana3_0525 at 616.369 kb on - strand, within Shewana3_0525 at 616.441 kb on + strand, within Shewana3_0525 at 616.449 kb on - strand, within Shewana3_0525
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 613,083 + Shewana3_0522 0.18 -0.2 613,163 + Shewana3_0522 0.26 -1.5 613,287 - Shewana3_0522 0.38 +1.1 613,287 - Shewana3_0522 0.38 -1.0 613,326 + Shewana3_0522 0.41 +0.4 613,359 - Shewana3_0522 0.45 +0.3 613,391 - Shewana3_0522 0.48 -0.2 613,454 - Shewana3_0522 0.54 +0.5 613,529 + Shewana3_0522 0.61 -0.8 613,556 - Shewana3_0522 0.63 -1.1 613,591 - Shewana3_0522 0.66 -0.6 613,616 - Shewana3_0522 0.69 -0.1 613,618 + Shewana3_0522 0.69 +1.7 613,626 - Shewana3_0522 0.70 +0.6 613,683 + Shewana3_0522 0.75 -1.3 613,686 - Shewana3_0522 0.75 -1.1 613,812 + Shewana3_0522 0.87 +0.6 613,812 + Shewana3_0522 0.87 -0.2 613,898 - +0.2 613,992 - -0.6 613,998 + -1.4 614,006 - +0.6 614,006 - +0.5 614,128 - Shewana3_0523 0.11 +0.2 614,264 + Shewana3_0523 0.19 +0.3 614,277 + Shewana3_0523 0.20 +0.7 614,313 - Shewana3_0523 0.22 -1.8 614,315 + Shewana3_0523 0.22 -1.1 614,795 - Shewana3_0523 0.52 +0.9 614,865 - Shewana3_0523 0.56 -2.2 614,930 + Shewana3_0523 0.60 +0.5 615,099 + Shewana3_0523 0.71 +0.6 615,117 + Shewana3_0523 0.72 -0.2 615,125 - Shewana3_0523 0.73 -0.6 615,321 + Shewana3_0523 0.85 +0.2 615,327 - Shewana3_0523 0.85 -0.7 615,390 - Shewana3_0523 0.89 -1.4 615,403 + Shewana3_0523 0.90 +0.2 615,403 + Shewana3_0523 0.90 -1.0 615,411 - +0.2 615,439 + +1.2 615,573 - -0.9 615,590 + +0.6 615,639 + -1.0 615,746 + Shewana3_0524 0.11 -0.3 615,909 - Shewana3_0524 0.46 -1.2 615,936 + Shewana3_0524 0.51 -1.3 616,031 - Shewana3_0524 0.72 -0.4 616,092 + Shewana3_0524 0.84 +0.4 616,348 + Shewana3_0525 0.43 +0.6 616,369 - Shewana3_0525 0.49 +0.2 616,441 + Shewana3_0525 0.71 +0.6 616,449 - Shewana3_0525 0.73 -1.8
Or see this region's nucleotide sequence