Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0477 and Shewana3_0478 overlap by 4 nucleotides Shewana3_0478 and Shewana3_0479 are separated by 66 nucleotides Shewana3_0479 and Shewana3_0480 are separated by 556 nucleotides
Shewana3_0477: Shewana3_0477 - hypothetical protein (RefSeq), at 554,705 to 555,811
_0477
Shewana3_0478: Shewana3_0478 - putative mitomycin resistance protein (RefSeq), at 555,808 to 556,098
_0478
Shewana3_0479: Shewana3_0479 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 556,165 to 557,217
_0479
Shewana3_0480: Shewana3_0480 - putative PAS/PAC sensor protein (RefSeq), at 557,774 to 562,834
_0480
Position (kb) 556
557
558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 555.283 kb on + strand, within Shewana3_0477 at 555.312 kb on + strand, within Shewana3_0477 at 555.410 kb on - strand, within Shewana3_0477 at 555.510 kb on - strand, within Shewana3_0477 at 555.568 kb on + strand, within Shewana3_0477 at 555.585 kb on + strand, within Shewana3_0477 at 555.756 kb on - strand at 555.783 kb on + strand at 555.790 kb on + strand at 555.806 kb on + strand at 555.806 kb on + strand at 555.857 kb on + strand, within Shewana3_0478 at 556.131 kb on + strand at 556.330 kb on - strand, within Shewana3_0479 at 556.335 kb on + strand, within Shewana3_0479 at 556.422 kb on + strand, within Shewana3_0479 at 556.801 kb on - strand, within Shewana3_0479 at 556.803 kb on + strand, within Shewana3_0479 at 556.842 kb on - strand, within Shewana3_0479 at 557.009 kb on - strand, within Shewana3_0479 at 557.066 kb on - strand, within Shewana3_0479 at 557.066 kb on - strand, within Shewana3_0479 at 557.068 kb on + strand, within Shewana3_0479 at 557.078 kb on - strand, within Shewana3_0479 at 557.328 kb on + strand at 557.404 kb on + strand at 557.721 kb on - strand at 557.856 kb on + strand at 557.883 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 555,283 + Shewana3_0477 0.52 -1.6 555,312 + Shewana3_0477 0.55 -2.3 555,410 - Shewana3_0477 0.64 -3.3 555,510 - Shewana3_0477 0.73 +0.1 555,568 + Shewana3_0477 0.78 +0.1 555,585 + Shewana3_0477 0.79 +0.3 555,756 - -1.0 555,783 + +0.3 555,790 + +1.3 555,806 + +1.9 555,806 + +0.2 555,857 + Shewana3_0478 0.17 +1.5 556,131 + -0.6 556,330 - Shewana3_0479 0.16 -0.4 556,335 + Shewana3_0479 0.16 -0.2 556,422 + Shewana3_0479 0.24 +0.2 556,801 - Shewana3_0479 0.60 -0.0 556,803 + Shewana3_0479 0.61 +0.5 556,842 - Shewana3_0479 0.64 -1.3 557,009 - Shewana3_0479 0.80 -0.1 557,066 - Shewana3_0479 0.86 +4.1 557,066 - Shewana3_0479 0.86 +0.7 557,068 + Shewana3_0479 0.86 -1.9 557,078 - Shewana3_0479 0.87 -1.4 557,328 + +0.5 557,404 + +0.8 557,721 - +0.9 557,856 + -1.0 557,883 + -0.4
Or see this region's nucleotide sequence