Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0467 and Shewana3_0468 are separated by 243 nucleotides Shewana3_0468 and uvrD are separated by 171 nucleotides
Shewana3_0467: Shewana3_0467 - hypothetical protein (RefSeq), at 541,429 to 543,396
_0467
Shewana3_0468: Shewana3_0468 - putative transcriptional regulator, CadC (RefSeq), at 543,640 to 544,560
_0468
Shewana3_0469: uvrD - DNA-dependent helicase II (RefSeq), at 544,732 to 546,900
uvrD
Position (kb) 543
544
545 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 542.662 kb on + strand, within Shewana3_0467 at 542.844 kb on - strand, within Shewana3_0467 at 543.061 kb on - strand, within Shewana3_0467 at 543.063 kb on + strand, within Shewana3_0467 at 543.063 kb on + strand, within Shewana3_0467 at 543.071 kb on - strand, within Shewana3_0467 at 543.071 kb on - strand, within Shewana3_0467 at 543.092 kb on + strand, within Shewana3_0467 at 543.100 kb on - strand, within Shewana3_0467 at 543.100 kb on - strand, within Shewana3_0467 at 543.124 kb on - strand, within Shewana3_0467 at 543.172 kb on + strand, within Shewana3_0467 at 543.172 kb on + strand, within Shewana3_0467 at 543.180 kb on - strand, within Shewana3_0467 at 543.180 kb on - strand, within Shewana3_0467 at 543.240 kb on + strand at 543.248 kb on + strand at 543.253 kb on + strand at 543.267 kb on - strand at 543.329 kb on + strand at 543.333 kb on + strand at 543.454 kb on - strand at 543.502 kb on + strand at 543.637 kb on + strand at 543.637 kb on + strand at 543.637 kb on + strand at 543.637 kb on + strand at 543.645 kb on - strand at 543.645 kb on - strand at 543.694 kb on + strand at 543.715 kb on - strand at 543.723 kb on - strand at 543.760 kb on + strand, within Shewana3_0468 at 543.770 kb on - strand, within Shewana3_0468 at 543.812 kb on + strand, within Shewana3_0468 at 543.925 kb on + strand, within Shewana3_0468 at 544.067 kb on + strand, within Shewana3_0468 at 544.091 kb on + strand, within Shewana3_0468 at 544.151 kb on + strand, within Shewana3_0468 at 544.160 kb on + strand, within Shewana3_0468 at 544.170 kb on - strand, within Shewana3_0468 at 544.321 kb on + strand, within Shewana3_0468 at 544.391 kb on - strand, within Shewana3_0468 at 544.396 kb on - strand, within Shewana3_0468 at 544.439 kb on - strand, within Shewana3_0468 at 544.444 kb on - strand, within Shewana3_0468 at 544.487 kb on - strand at 544.678 kb on - strand at 544.800 kb on - strand at 544.865 kb on + strand at 544.953 kb on + strand, within uvrD at 544.989 kb on + strand, within uvrD at 545.014 kb on - strand, within uvrD at 545.042 kb on - strand, within uvrD at 545.393 kb on + strand, within uvrD at 545.401 kb on - strand, within uvrD at 545.458 kb on - strand, within uvrD
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 542,662 + Shewana3_0467 0.63 -0.8 542,844 - Shewana3_0467 0.72 -1.1 543,061 - Shewana3_0467 0.83 +0.5 543,063 + Shewana3_0467 0.83 -1.3 543,063 + Shewana3_0467 0.83 +0.2 543,071 - Shewana3_0467 0.83 -2.5 543,071 - Shewana3_0467 0.83 +0.9 543,092 + Shewana3_0467 0.85 -0.3 543,100 - Shewana3_0467 0.85 -2.2 543,100 - Shewana3_0467 0.85 +1.0 543,124 - Shewana3_0467 0.86 +1.1 543,172 + Shewana3_0467 0.89 -0.2 543,172 + Shewana3_0467 0.89 +0.1 543,180 - Shewana3_0467 0.89 +0.8 543,180 - Shewana3_0467 0.89 +0.4 543,240 + -1.4 543,248 + +1.8 543,253 + -1.4 543,267 - +0.5 543,329 + +3.2 543,333 + +0.1 543,454 - -0.6 543,502 + +0.5 543,637 + +0.4 543,637 + +0.5 543,637 + -1.5 543,637 + +0.2 543,645 - +1.5 543,645 - -0.0 543,694 + -0.6 543,715 - +0.1 543,723 - +0.1 543,760 + Shewana3_0468 0.13 -1.2 543,770 - Shewana3_0468 0.14 -3.0 543,812 + Shewana3_0468 0.19 -0.3 543,925 + Shewana3_0468 0.31 +0.6 544,067 + Shewana3_0468 0.46 -2.0 544,091 + Shewana3_0468 0.49 -0.2 544,151 + Shewana3_0468 0.55 +1.2 544,160 + Shewana3_0468 0.56 -0.9 544,170 - Shewana3_0468 0.58 -0.5 544,321 + Shewana3_0468 0.74 +0.5 544,391 - Shewana3_0468 0.82 +0.9 544,396 - Shewana3_0468 0.82 -1.4 544,439 - Shewana3_0468 0.87 -0.1 544,444 - Shewana3_0468 0.87 +1.2 544,487 - -1.6 544,678 - -0.2 544,800 - +0.2 544,865 + +0.5 544,953 + uvrD Shewana3_0469 0.10 -1.5 544,989 + uvrD Shewana3_0469 0.12 -1.7 545,014 - uvrD Shewana3_0469 0.13 +0.8 545,042 - uvrD Shewana3_0469 0.14 -0.8 545,393 + uvrD Shewana3_0469 0.30 -0.2 545,401 - uvrD Shewana3_0469 0.31 +0.9 545,458 - uvrD Shewana3_0469 0.33 -0.3
Or see this region's nucleotide sequence