Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0467 and Shewana3_0468 are separated by 243 nucleotides
Shewana3_0467: Shewana3_0467 - hypothetical protein (RefSeq), at 541,429 to 543,396
_0467
Shewana3_0468: Shewana3_0468 - putative transcriptional regulator, CadC (RefSeq), at 543,640 to 544,560
_0468
Position (kb) 541
542
543
544 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 540.705 kb on + strand at 541.115 kb on - strand at 541.115 kb on - strand at 541.308 kb on - strand at 541.422 kb on + strand at 541.451 kb on - strand at 541.485 kb on + strand at 541.702 kb on + strand, within Shewana3_0467 at 541.702 kb on + strand, within Shewana3_0467 at 541.848 kb on + strand, within Shewana3_0467 at 541.848 kb on + strand, within Shewana3_0467 at 541.856 kb on - strand, within Shewana3_0467 at 541.892 kb on + strand, within Shewana3_0467 at 542.028 kb on + strand, within Shewana3_0467 at 542.036 kb on - strand, within Shewana3_0467 at 542.061 kb on + strand, within Shewana3_0467 at 542.152 kb on + strand, within Shewana3_0467 at 542.301 kb on + strand, within Shewana3_0467 at 542.315 kb on - strand, within Shewana3_0467 at 542.367 kb on - strand, within Shewana3_0467 at 542.459 kb on + strand, within Shewana3_0467 at 542.538 kb on - strand, within Shewana3_0467 at 542.598 kb on + strand, within Shewana3_0467 at 542.605 kb on + strand, within Shewana3_0467 at 542.662 kb on + strand, within Shewana3_0467 at 542.844 kb on - strand, within Shewana3_0467 at 543.061 kb on - strand, within Shewana3_0467 at 543.063 kb on + strand, within Shewana3_0467 at 543.063 kb on + strand, within Shewana3_0467 at 543.071 kb on - strand, within Shewana3_0467 at 543.071 kb on - strand, within Shewana3_0467 at 543.092 kb on + strand, within Shewana3_0467 at 543.100 kb on - strand, within Shewana3_0467 at 543.100 kb on - strand, within Shewana3_0467 at 543.124 kb on - strand, within Shewana3_0467 at 543.172 kb on + strand, within Shewana3_0467 at 543.172 kb on + strand, within Shewana3_0467 at 543.180 kb on - strand, within Shewana3_0467 at 543.180 kb on - strand, within Shewana3_0467 at 543.240 kb on + strand at 543.248 kb on + strand at 543.253 kb on + strand at 543.267 kb on - strand at 543.329 kb on + strand at 543.333 kb on + strand at 543.454 kb on - strand at 543.502 kb on + strand at 543.637 kb on + strand at 543.637 kb on + strand at 543.637 kb on + strand at 543.637 kb on + strand at 543.645 kb on - strand at 543.645 kb on - strand at 543.694 kb on + strand at 543.715 kb on - strand at 543.723 kb on - strand at 543.760 kb on + strand, within Shewana3_0468 at 543.770 kb on - strand, within Shewana3_0468 at 543.812 kb on + strand, within Shewana3_0468 at 543.925 kb on + strand, within Shewana3_0468 at 544.067 kb on + strand, within Shewana3_0468 at 544.091 kb on + strand, within Shewana3_0468 at 544.151 kb on + strand, within Shewana3_0468 at 544.160 kb on + strand, within Shewana3_0468 at 544.170 kb on - strand, within Shewana3_0468 at 544.321 kb on + strand, within Shewana3_0468 at 544.391 kb on - strand, within Shewana3_0468 at 544.396 kb on - strand, within Shewana3_0468
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 540,705 + +0.5 541,115 - -1.1 541,115 - -0.3 541,308 - -0.6 541,422 + -0.0 541,451 - +0.5 541,485 + -2.3 541,702 + Shewana3_0467 0.14 +0.1 541,702 + Shewana3_0467 0.14 -0.7 541,848 + Shewana3_0467 0.21 -1.3 541,848 + Shewana3_0467 0.21 +0.5 541,856 - Shewana3_0467 0.22 +0.1 541,892 + Shewana3_0467 0.24 -1.1 542,028 + Shewana3_0467 0.30 +0.1 542,036 - Shewana3_0467 0.31 +0.4 542,061 + Shewana3_0467 0.32 +0.5 542,152 + Shewana3_0467 0.37 -0.7 542,301 + Shewana3_0467 0.44 -0.6 542,315 - Shewana3_0467 0.45 -2.3 542,367 - Shewana3_0467 0.48 +1.5 542,459 + Shewana3_0467 0.52 -0.7 542,538 - Shewana3_0467 0.56 -1.2 542,598 + Shewana3_0467 0.59 +0.6 542,605 + Shewana3_0467 0.60 -0.4 542,662 + Shewana3_0467 0.63 -0.8 542,844 - Shewana3_0467 0.72 -1.1 543,061 - Shewana3_0467 0.83 +0.5 543,063 + Shewana3_0467 0.83 -1.3 543,063 + Shewana3_0467 0.83 +0.2 543,071 - Shewana3_0467 0.83 -2.5 543,071 - Shewana3_0467 0.83 +0.9 543,092 + Shewana3_0467 0.85 -0.3 543,100 - Shewana3_0467 0.85 -2.2 543,100 - Shewana3_0467 0.85 +1.0 543,124 - Shewana3_0467 0.86 +1.1 543,172 + Shewana3_0467 0.89 -0.2 543,172 + Shewana3_0467 0.89 +0.1 543,180 - Shewana3_0467 0.89 +0.8 543,180 - Shewana3_0467 0.89 +0.4 543,240 + -1.4 543,248 + +1.8 543,253 + -1.4 543,267 - +0.5 543,329 + +3.2 543,333 + +0.1 543,454 - -0.6 543,502 + +0.5 543,637 + +0.4 543,637 + +0.5 543,637 + -1.5 543,637 + +0.2 543,645 - +1.5 543,645 - -0.0 543,694 + -0.6 543,715 - +0.1 543,723 - +0.1 543,760 + Shewana3_0468 0.13 -1.2 543,770 - Shewana3_0468 0.14 -3.0 543,812 + Shewana3_0468 0.19 -0.3 543,925 + Shewana3_0468 0.31 +0.6 544,067 + Shewana3_0468 0.46 -2.0 544,091 + Shewana3_0468 0.49 -0.2 544,151 + Shewana3_0468 0.55 +1.2 544,160 + Shewana3_0468 0.56 -0.9 544,170 - Shewana3_0468 0.58 -0.5 544,321 + Shewana3_0468 0.74 +0.5 544,391 - Shewana3_0468 0.82 +0.9 544,396 - Shewana3_0468 0.82 -1.4
Or see this region's nucleotide sequence