Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0457

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0456 and Shewana3_0457 are separated by 107 nucleotidesShewana3_0457 and Shewana3_0458 are separated by 493 nucleotidesShewana3_0458 and Shewana3_0459 are separated by 300 nucleotides Shewana3_0456: Shewana3_0456 - TRAP transporter, 4TM/12TM fusion protein (RefSeq), at 530,394 to 532,427 _0456 Shewana3_0457: Shewana3_0457 - response regulator receiver protein (RefSeq), at 532,535 to 533,491 _0457 Shewana3_0458: Shewana3_0458 - hypothetical protein (RefSeq), at 533,985 to 534,119 _0458 Shewana3_0459: Shewana3_0459 - protein of unknown function DUF853, NPT hydrolase putative (RefSeq), at 534,420 to 535,913 _0459 Position (kb) 532 533 534Strain fitness (log2 ratio) -2 -1 0 1 2at 531.728 kb on - strand, within Shewana3_0456at 531.889 kb on - strand, within Shewana3_0456at 531.907 kb on - strand, within Shewana3_0456at 532.048 kb on + strand, within Shewana3_0456at 532.072 kb on + strand, within Shewana3_0456at 532.102 kb on - strand, within Shewana3_0456at 532.135 kb on - strand, within Shewana3_0456at 532.209 kb on + strand, within Shewana3_0456at 532.217 kb on - strand, within Shewana3_0456at 532.217 kb on - strand, within Shewana3_0456at 532.217 kb on - strand, within Shewana3_0456at 532.217 kb on - strand, within Shewana3_0456at 532.225 kb on + strandat 532.363 kb on + strandat 532.363 kb on + strandat 532.371 kb on - strandat 532.375 kb on + strandat 532.442 kb on + strandat 532.447 kb on + strandat 532.450 kb on - strandat 532.450 kb on - strandat 532.467 kb on + strandat 532.474 kb on + strandat 532.519 kb on + strandat 532.532 kb on + strandat 532.532 kb on + strandat 532.532 kb on + strandat 532.532 kb on + strandat 532.532 kb on + strandat 532.532 kb on + strandat 532.540 kb on - strandat 532.540 kb on - strandat 532.540 kb on - strandat 532.540 kb on - strandat 532.580 kb on - strandat 532.670 kb on + strand, within Shewana3_0457at 532.787 kb on + strand, within Shewana3_0457at 532.903 kb on - strand, within Shewana3_0457at 532.903 kb on - strand, within Shewana3_0457at 532.907 kb on + strand, within Shewana3_0457at 532.920 kb on + strand, within Shewana3_0457at 532.928 kb on - strand, within Shewana3_0457at 532.962 kb on - strand, within Shewana3_0457at 533.209 kb on - strand, within Shewana3_0457at 533.228 kb on + strand, within Shewana3_0457at 533.431 kb on - strandat 533.446 kb on + strandat 533.455 kb on - strandat 533.524 kb on - strandat 533.664 kb on - strandat 534.175 kb on + strandat 534.287 kb on - strandat 534.320 kb on - strandat 534.404 kb on + strandat 534.412 kb on - strandat 534.412 kb on - strandat 534.412 kb on - strandat 534.416 kb on + strandat 534.490 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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531,728 - Shewana3_0456 0.66 +0.1
531,889 - Shewana3_0456 0.74 -0.4
531,907 - Shewana3_0456 0.74 -1.8
532,048 + Shewana3_0456 0.81 +2.5
532,072 + Shewana3_0456 0.82 +0.3
532,102 - Shewana3_0456 0.84 -0.0
532,135 - Shewana3_0456 0.86 +0.1
532,209 + Shewana3_0456 0.89 -1.0
532,217 - Shewana3_0456 0.90 -0.3
532,217 - Shewana3_0456 0.90 +0.3
532,217 - Shewana3_0456 0.90 -0.4
532,217 - Shewana3_0456 0.90 +0.1
532,225 + -0.1
532,363 + -1.3
532,363 + +0.3
532,371 - +0.5
532,375 + +0.1
532,442 + +1.0
532,447 + -1.5
532,450 - -2.5
532,450 - +0.5
532,467 + -2.0
532,474 + -1.0
532,519 + +0.1
532,532 + -1.0
532,532 + +0.2
532,532 + +1.8
532,532 + +2.6
532,532 + +1.4
532,532 + +0.4
532,540 - +2.5
532,540 - -2.6
532,540 - +0.1
532,540 - -1.7
532,580 - -0.0
532,670 + Shewana3_0457 0.14 -1.7
532,787 + Shewana3_0457 0.26 -1.9
532,903 - Shewana3_0457 0.38 +0.1
532,903 - Shewana3_0457 0.38 +0.7
532,907 + Shewana3_0457 0.39 +1.8
532,920 + Shewana3_0457 0.40 -1.5
532,928 - Shewana3_0457 0.41 -1.2
532,962 - Shewana3_0457 0.45 +1.1
533,209 - Shewana3_0457 0.70 -1.3
533,228 + Shewana3_0457 0.72 -0.8
533,431 - -0.5
533,446 + +2.3
533,455 - -1.5
533,524 - +0.9
533,664 - +0.9
534,175 + -0.5
534,287 - -0.1
534,320 - +0.2
534,404 + -0.0
534,412 - +0.7
534,412 - -0.8
534,412 - +1.2
534,416 + +0.1
534,490 + -0.2

Or see this region's nucleotide sequence