Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0449 and Shewana3_0450 are separated by 333 nucleotides Shewana3_0450 and Shewana3_0451 are separated by 84 nucleotides Shewana3_0451 and Shewana3_0452 are separated by 63 nucleotides Shewana3_0452 and Shewana3_0453 are separated by 189 nucleotides
Shewana3_0449: Shewana3_0449 - diguanylate cyclase with GAF sensor (RefSeq), at 524,652 to 525,695
_0449
Shewana3_0450: Shewana3_0450 - no description, at 526,029 to 526,265
_0450
Shewana3_0451: Shewana3_0451 - anion transporter (RefSeq), at 526,350 to 527,750
_0451
Shewana3_0452: Shewana3_0452 - thioredoxin (RefSeq), at 527,814 to 528,236
_0452
Shewana3_0453: Shewana3_0453 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 528,426 to 528,761
_0453
Position (kb) 526
527
528 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 525.368 kb on - strand, within Shewana3_0449 at 525.393 kb on + strand, within Shewana3_0449 at 525.425 kb on + strand, within Shewana3_0449 at 525.516 kb on + strand, within Shewana3_0449 at 525.527 kb on + strand, within Shewana3_0449 at 525.549 kb on - strand, within Shewana3_0449 at 525.657 kb on - strand at 525.668 kb on + strand at 525.705 kb on + strand at 525.712 kb on + strand at 526.090 kb on + strand, within Shewana3_0450 at 526.463 kb on + strand at 526.471 kb on - strand at 526.508 kb on - strand, within Shewana3_0451 at 526.517 kb on - strand, within Shewana3_0451 at 526.542 kb on - strand, within Shewana3_0451 at 526.594 kb on + strand, within Shewana3_0451 at 526.875 kb on + strand, within Shewana3_0451 at 527.201 kb on + strand, within Shewana3_0451 at 527.280 kb on - strand, within Shewana3_0451 at 527.352 kb on - strand, within Shewana3_0451 at 527.541 kb on + strand, within Shewana3_0451 at 527.549 kb on + strand, within Shewana3_0451 at 527.617 kb on - strand at 527.652 kb on - strand at 527.712 kb on + strand at 527.722 kb on + strand at 527.745 kb on + strand at 527.754 kb on + strand at 527.754 kb on + strand at 527.762 kb on - strand at 527.762 kb on - strand at 527.762 kb on - strand at 527.967 kb on - strand, within Shewana3_0452 at 528.209 kb on - strand at 528.311 kb on + strand at 528.311 kb on + strand at 528.311 kb on + strand at 528.319 kb on - strand at 528.319 kb on - strand at 528.541 kb on - strand, within Shewana3_0453 at 528.663 kb on + strand, within Shewana3_0453 at 528.717 kb on - strand, within Shewana3_0453
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 525,368 - Shewana3_0449 0.69 +0.6 525,393 + Shewana3_0449 0.71 -0.7 525,425 + Shewana3_0449 0.74 +0.3 525,516 + Shewana3_0449 0.83 +0.4 525,527 + Shewana3_0449 0.84 -2.9 525,549 - Shewana3_0449 0.86 +0.4 525,657 - +0.8 525,668 + -0.0 525,705 + -3.0 525,712 + -1.5 526,090 + Shewana3_0450 0.26 +0.3 526,463 + +0.6 526,471 - +0.3 526,508 - Shewana3_0451 0.11 +0.6 526,517 - Shewana3_0451 0.12 +0.5 526,542 - Shewana3_0451 0.14 -0.1 526,594 + Shewana3_0451 0.17 -2.1 526,875 + Shewana3_0451 0.37 -0.8 527,201 + Shewana3_0451 0.61 -0.7 527,280 - Shewana3_0451 0.66 -0.9 527,352 - Shewana3_0451 0.72 -0.6 527,541 + Shewana3_0451 0.85 -0.9 527,549 + Shewana3_0451 0.86 +0.5 527,617 - -1.1 527,652 - +1.2 527,712 + -0.0 527,722 + -1.1 527,745 + -1.1 527,754 + +0.8 527,754 + +1.2 527,762 - +0.8 527,762 - -0.8 527,762 - +0.2 527,967 - Shewana3_0452 0.36 -0.0 528,209 - +0.5 528,311 + -0.9 528,311 + +0.4 528,311 + -1.3 528,319 - -1.1 528,319 - -0.5 528,541 - Shewana3_0453 0.34 +0.1 528,663 + Shewana3_0453 0.71 +0.7 528,717 - Shewana3_0453 0.87 +2.3
Or see this region's nucleotide sequence