Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0406 and Shewana3_0407 are separated by 118 nucleotides Shewana3_0407 and rho are separated by 177 nucleotides
Shewana3_0406: Shewana3_0406 - alcohol dehydrogenase (RefSeq), at 465,040 to 466,062
_0406
Shewana3_0407: Shewana3_0407 - LysR family transcriptional regulator (RefSeq), at 466,181 to 467,113
_0407
Shewana3_0408: rho - transcription termination factor Rho (RefSeq), at 467,291 to 468,556
rho
Position (kb) 466
467
468 Strain fitness (log2 ratio) -1
0
1
2 at 465.289 kb on - strand, within Shewana3_0406 at 465.344 kb on + strand, within Shewana3_0406 at 465.395 kb on - strand, within Shewana3_0406 at 465.397 kb on + strand, within Shewana3_0406 at 465.573 kb on + strand, within Shewana3_0406 at 465.692 kb on + strand, within Shewana3_0406 at 465.708 kb on + strand, within Shewana3_0406 at 465.853 kb on - strand, within Shewana3_0406 at 465.905 kb on - strand, within Shewana3_0406 at 465.955 kb on - strand, within Shewana3_0406 at 465.974 kb on - strand at 465.974 kb on - strand at 466.251 kb on + strand at 466.374 kb on - strand, within Shewana3_0407 at 466.606 kb on + strand, within Shewana3_0407 at 466.716 kb on + strand, within Shewana3_0407 at 466.716 kb on + strand, within Shewana3_0407 at 466.716 kb on - strand, within Shewana3_0407 at 466.885 kb on - strand, within Shewana3_0407 at 466.936 kb on + strand, within Shewana3_0407 at 466.937 kb on + strand, within Shewana3_0407 at 467.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 465,289 - Shewana3_0406 0.24 -1.1 465,344 + Shewana3_0406 0.30 +0.0 465,395 - Shewana3_0406 0.35 -1.0 465,397 + Shewana3_0406 0.35 -0.6 465,573 + Shewana3_0406 0.52 -0.5 465,692 + Shewana3_0406 0.64 -1.0 465,708 + Shewana3_0406 0.65 +1.0 465,853 - Shewana3_0406 0.79 +0.1 465,905 - Shewana3_0406 0.85 +0.5 465,955 - Shewana3_0406 0.89 -0.2 465,974 - +1.5 465,974 - -1.5 466,251 + +2.6 466,374 - Shewana3_0407 0.21 -1.0 466,606 + Shewana3_0407 0.46 -1.2 466,716 + Shewana3_0407 0.57 -1.2 466,716 + Shewana3_0407 0.57 +0.5 466,716 - Shewana3_0407 0.57 -0.5 466,885 - Shewana3_0407 0.75 -1.0 466,936 + Shewana3_0407 0.81 +0.7 466,937 + Shewana3_0407 0.81 +0.2 467,200 - +1.2
Or see this region's nucleotide sequence