Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prmA and Shewana3_0401 are separated by 442 nucleotides Shewana3_0401 and Shewana3_0402 are separated by 206 nucleotides Shewana3_0402 and Shewana3_0403 are separated by 61 nucleotides
Shewana3_0400: prmA - ribosomal protein L11 methyltransferase (RefSeq), at 458,969 to 459,850
prmA
Shewana3_0401: Shewana3_0401 - fumarate reductase cytochrome b-556 subunit (RefSeq), at 460,293 to 461,018
_0401
Shewana3_0402: Shewana3_0402 - fumarate reductase respiratory complex, transmembrane subunit (RefSeq), at 461,225 to 461,896
_0402
Shewana3_0403: Shewana3_0403 - fumarate reductase flavoprotein subunit (RefSeq), at 461,958 to 463,964
_0403
Position (kb) 460
461
462 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 459.390 kb on - strand, within prmA at 459.390 kb on - strand, within prmA at 459.390 kb on - strand, within prmA at 459.576 kb on + strand, within prmA at 459.666 kb on + strand, within prmA at 459.751 kb on + strand, within prmA at 459.759 kb on - strand, within prmA at 459.759 kb on - strand, within prmA at 459.851 kb on + strand at 459.858 kb on + strand at 460.045 kb on + strand at 460.208 kb on - strand at 460.344 kb on - strand at 460.368 kb on + strand, within Shewana3_0401 at 460.387 kb on + strand, within Shewana3_0401 at 460.395 kb on - strand, within Shewana3_0401 at 460.395 kb on - strand, within Shewana3_0401 at 460.402 kb on + strand, within Shewana3_0401 at 460.501 kb on + strand, within Shewana3_0401 at 460.514 kb on - strand, within Shewana3_0401 at 460.514 kb on - strand, within Shewana3_0401 at 460.650 kb on - strand, within Shewana3_0401 at 460.729 kb on - strand, within Shewana3_0401 at 460.799 kb on + strand, within Shewana3_0401 at 460.809 kb on - strand, within Shewana3_0401 at 460.960 kb on + strand at 460.983 kb on - strand at 460.995 kb on + strand at 461.037 kb on + strand at 461.200 kb on - strand at 461.200 kb on - strand at 461.200 kb on - strand at 461.365 kb on - strand, within Shewana3_0402 at 461.370 kb on - strand, within Shewana3_0402 at 461.387 kb on - strand, within Shewana3_0402 at 461.418 kb on + strand, within Shewana3_0402 at 461.470 kb on - strand, within Shewana3_0402 at 461.535 kb on + strand, within Shewana3_0402 at 461.566 kb on + strand, within Shewana3_0402 at 461.571 kb on + strand, within Shewana3_0402 at 461.670 kb on + strand, within Shewana3_0402 at 461.765 kb on + strand, within Shewana3_0402 at 461.765 kb on + strand, within Shewana3_0402 at 461.942 kb on + strand at 462.015 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 459,390 - prmA Shewana3_0400 0.48 +0.3 459,390 - prmA Shewana3_0400 0.48 -0.5 459,390 - prmA Shewana3_0400 0.48 +1.3 459,576 + prmA Shewana3_0400 0.69 +1.0 459,666 + prmA Shewana3_0400 0.79 -1.6 459,751 + prmA Shewana3_0400 0.89 -1.2 459,759 - prmA Shewana3_0400 0.90 +0.0 459,759 - prmA Shewana3_0400 0.90 +0.6 459,851 + -1.0 459,858 + +0.9 460,045 + -0.1 460,208 - +0.9 460,344 - -1.2 460,368 + Shewana3_0401 0.10 -1.2 460,387 + Shewana3_0401 0.13 -1.8 460,395 - Shewana3_0401 0.14 +0.2 460,395 - Shewana3_0401 0.14 -0.2 460,402 + Shewana3_0401 0.15 -0.0 460,501 + Shewana3_0401 0.29 -1.0 460,514 - Shewana3_0401 0.30 -0.1 460,514 - Shewana3_0401 0.30 +0.7 460,650 - Shewana3_0401 0.49 -0.8 460,729 - Shewana3_0401 0.60 +0.2 460,799 + Shewana3_0401 0.70 -2.5 460,809 - Shewana3_0401 0.71 +0.3 460,960 + -0.1 460,983 - +0.4 460,995 + -1.2 461,037 + +0.1 461,200 - -0.3 461,200 - +0.7 461,200 - -0.5 461,365 - Shewana3_0402 0.21 -2.0 461,370 - Shewana3_0402 0.22 +0.3 461,387 - Shewana3_0402 0.24 +2.8 461,418 + Shewana3_0402 0.29 -0.3 461,470 - Shewana3_0402 0.36 +0.0 461,535 + Shewana3_0402 0.46 -1.4 461,566 + Shewana3_0402 0.51 -1.1 461,571 + Shewana3_0402 0.51 -0.6 461,670 + Shewana3_0402 0.66 +3.7 461,765 + Shewana3_0402 0.80 -0.4 461,765 + Shewana3_0402 0.80 -1.8 461,942 + +0.5 462,015 - +0.7
Or see this region's nucleotide sequence