Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0359 and Shewana3_0360 are separated by 142 nucleotides Shewana3_0360 and Shewana3_0361 are separated by 1 nucleotides Shewana3_0361 and Shewana3_0362 are separated by 344 nucleotides
Shewana3_0359: Shewana3_0359 - threonine dehydratase (RefSeq), at 396,057 to 397,700
_0359
Shewana3_0360: Shewana3_0360 - alanine-glyoxylate aminotransferase (RefSeq), at 397,843 to 398,976
_0360
Shewana3_0361: Shewana3_0361 - hypothetical protein (RefSeq), at 398,978 to 399,271
_0361
Shewana3_0362: Shewana3_0362 - hypothetical protein (RefSeq), at 399,616 to 399,855
_0362
Position (kb) 397
398
399 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 396.864 kb on - strand, within Shewana3_0359 at 397.490 kb on - strand, within Shewana3_0359 at 397.503 kb on - strand, within Shewana3_0359 at 397.544 kb on - strand at 397.610 kb on + strand at 397.610 kb on + strand at 397.734 kb on - strand at 397.752 kb on - strand at 397.778 kb on + strand at 397.828 kb on + strand at 398.284 kb on - strand, within Shewana3_0360 at 398.294 kb on + strand, within Shewana3_0360 at 398.380 kb on + strand, within Shewana3_0360 at 398.390 kb on - strand, within Shewana3_0360 at 398.567 kb on - strand, within Shewana3_0360 at 398.705 kb on + strand, within Shewana3_0360 at 398.842 kb on + strand, within Shewana3_0360 at 398.954 kb on + strand at 398.968 kb on - strand at 399.166 kb on - strand, within Shewana3_0361 at 399.295 kb on + strand at 399.850 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 396,864 - Shewana3_0359 0.49 -5.7 397,490 - Shewana3_0359 0.87 -5.5 397,503 - Shewana3_0359 0.88 -4.2 397,544 - -4.6 397,610 + -2.6 397,610 + -3.8 397,734 - -0.2 397,752 - -1.9 397,778 + +0.9 397,828 + +1.9 398,284 - Shewana3_0360 0.39 -0.8 398,294 + Shewana3_0360 0.40 +1.6 398,380 + Shewana3_0360 0.47 -0.4 398,390 - Shewana3_0360 0.48 -0.9 398,567 - Shewana3_0360 0.64 -0.1 398,705 + Shewana3_0360 0.76 -0.0 398,842 + Shewana3_0360 0.88 +2.3 398,954 + -1.2 398,968 - -2.1 399,166 - Shewana3_0361 0.64 +0.7 399,295 + -0.0 399,850 + -1.1
Or see this region's nucleotide sequence