Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0353 and Shewana3_0354 are separated by 59 nucleotides Shewana3_0354 and Shewana3_0355 are separated by 196 nucleotides
Shewana3_0353: Shewana3_0353 - hypothetical protein (RefSeq), at 387,672 to 388,988
_0353
Shewana3_0354: Shewana3_0354 - DNA-binding transcriptional regulator IlvY (RefSeq), at 389,048 to 389,920
_0354
Shewana3_0355: Shewana3_0355 - ketol-acid reductoisomerase (RefSeq), at 390,117 to 391,595
_0355
Position (kb) 389
390 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 388.177 kb on + strand, within Shewana3_0353 at 388.177 kb on + strand, within Shewana3_0353 at 388.177 kb on + strand, within Shewana3_0353 at 388.246 kb on - strand, within Shewana3_0353 at 388.457 kb on - strand, within Shewana3_0353 at 388.457 kb on - strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.560 kb on - strand, within Shewana3_0353 at 388.560 kb on - strand, within Shewana3_0353 at 388.560 kb on - strand, within Shewana3_0353 at 388.835 kb on - strand, within Shewana3_0353 at 388.985 kb on - strand at 389.099 kb on - strand at 389.199 kb on - strand, within Shewana3_0354 at 389.217 kb on - strand, within Shewana3_0354 at 389.288 kb on - strand, within Shewana3_0354 at 389.399 kb on + strand, within Shewana3_0354 at 389.407 kb on - strand, within Shewana3_0354 at 389.433 kb on + strand, within Shewana3_0354 at 389.689 kb on - strand, within Shewana3_0354 at 389.716 kb on - strand, within Shewana3_0354 at 389.747 kb on + strand, within Shewana3_0354 at 389.755 kb on - strand, within Shewana3_0354 at 389.878 kb on - strand at 390.281 kb on - strand, within Shewana3_0355 at 390.396 kb on - strand, within Shewana3_0355 at 390.448 kb on + strand, within Shewana3_0355 at 390.458 kb on + strand, within Shewana3_0355 at 390.466 kb on - strand, within Shewana3_0355 at 390.675 kb on + strand, within Shewana3_0355 at 390.676 kb on + strand, within Shewana3_0355 at 390.684 kb on - strand, within Shewana3_0355 at 390.711 kb on + strand, within Shewana3_0355 at 390.816 kb on + strand, within Shewana3_0355 at 390.824 kb on - strand, within Shewana3_0355 at 390.824 kb on - strand, within Shewana3_0355 at 390.855 kb on - strand, within Shewana3_0355
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 388,177 + Shewana3_0353 0.38 +0.9 388,177 + Shewana3_0353 0.38 -0.2 388,177 + Shewana3_0353 0.38 -1.4 388,246 - Shewana3_0353 0.44 +0.0 388,457 - Shewana3_0353 0.60 +0.0 388,457 - Shewana3_0353 0.60 +1.2 388,552 + Shewana3_0353 0.67 +0.6 388,552 + Shewana3_0353 0.67 +1.7 388,552 + Shewana3_0353 0.67 +1.0 388,552 + Shewana3_0353 0.67 +1.4 388,552 + Shewana3_0353 0.67 -0.3 388,560 - Shewana3_0353 0.67 -0.8 388,560 - Shewana3_0353 0.67 -0.7 388,560 - Shewana3_0353 0.67 -1.6 388,835 - Shewana3_0353 0.88 +0.2 388,985 - -0.1 389,099 - -5.1 389,199 - Shewana3_0354 0.17 -6.0 389,217 - Shewana3_0354 0.19 -5.4 389,288 - Shewana3_0354 0.27 -2.9 389,399 + Shewana3_0354 0.40 +0.0 389,407 - Shewana3_0354 0.41 -4.8 389,433 + Shewana3_0354 0.44 -7.0 389,689 - Shewana3_0354 0.73 -4.1 389,716 - Shewana3_0354 0.77 -4.3 389,747 + Shewana3_0354 0.80 -2.9 389,755 - Shewana3_0354 0.81 -4.3 389,878 - -6.2 390,281 - Shewana3_0355 0.11 -4.5 390,396 - Shewana3_0355 0.19 -3.4 390,448 + Shewana3_0355 0.22 -3.2 390,458 + Shewana3_0355 0.23 -5.8 390,466 - Shewana3_0355 0.24 -3.3 390,675 + Shewana3_0355 0.38 -5.1 390,676 + Shewana3_0355 0.38 -3.9 390,684 - Shewana3_0355 0.38 -4.7 390,711 + Shewana3_0355 0.40 -6.1 390,816 + Shewana3_0355 0.47 -6.2 390,824 - Shewana3_0355 0.48 -5.4 390,824 - Shewana3_0355 0.48 -4.5 390,855 - Shewana3_0355 0.50 -4.5
Or see this region's nucleotide sequence