Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0291 and Shewana3_0292 are separated by 105 nucleotides Shewana3_0292 and Shewana3_0293 are separated by 80 nucleotides Shewana3_0293 and Shewana3_0294 are separated by 283 nucleotides
Shewana3_0291: Shewana3_0291 - Zn-dependent hydrolase of the beta-lactamase fold (RefSeq), at 323,374 to 324,492
_0291
Shewana3_0292: Shewana3_0292 - TetR family transcriptional regulator (RefSeq), at 324,598 to 325,209
_0292
Shewana3_0293: Shewana3_0293 - anaerobic C4-dicarboxylate transporter (RefSeq), at 325,290 to 326,633
_0293
Shewana3_0294: Shewana3_0294 - hypothetical protein (RefSeq), at 326,917 to 328,095
_0294
Position (kb) 325
326
327 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 324.365 kb on - strand, within Shewana3_0291 at 324.810 kb on + strand, within Shewana3_0292 at 324.810 kb on + strand, within Shewana3_0292 at 325.102 kb on - strand, within Shewana3_0292 at 325.102 kb on - strand, within Shewana3_0292 at 325.103 kb on - strand, within Shewana3_0292 at 325.139 kb on + strand, within Shewana3_0292 at 325.342 kb on - strand at 325.507 kb on + strand, within Shewana3_0293 at 325.608 kb on + strand, within Shewana3_0293 at 325.636 kb on - strand, within Shewana3_0293 at 325.674 kb on + strand, within Shewana3_0293 at 325.682 kb on - strand, within Shewana3_0293 at 325.682 kb on - strand, within Shewana3_0293 at 325.717 kb on + strand, within Shewana3_0293 at 325.725 kb on - strand, within Shewana3_0293 at 325.958 kb on + strand, within Shewana3_0293 at 326.037 kb on - strand, within Shewana3_0293 at 326.066 kb on - strand, within Shewana3_0293 at 326.146 kb on - strand, within Shewana3_0293 at 326.309 kb on - strand, within Shewana3_0293 at 326.340 kb on + strand, within Shewana3_0293 at 326.509 kb on - strand at 326.527 kb on - strand at 326.573 kb on - strand at 326.677 kb on - strand at 326.929 kb on + strand at 326.945 kb on - strand at 327.008 kb on - strand at 327.008 kb on - strand at 327.085 kb on - strand, within Shewana3_0294 at 327.087 kb on + strand, within Shewana3_0294 at 327.124 kb on + strand, within Shewana3_0294 at 327.124 kb on + strand, within Shewana3_0294 at 327.132 kb on - strand, within Shewana3_0294 at 327.134 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.173 kb on - strand, within Shewana3_0294 at 327.601 kb on + strand, within Shewana3_0294 at 327.609 kb on - strand, within Shewana3_0294
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 324,365 - Shewana3_0291 0.89 -0.7 324,810 + Shewana3_0292 0.35 -0.6 324,810 + Shewana3_0292 0.35 -0.1 325,102 - Shewana3_0292 0.82 +0.3 325,102 - Shewana3_0292 0.82 -1.6 325,103 - Shewana3_0292 0.83 -0.1 325,139 + Shewana3_0292 0.88 -2.7 325,342 - -1.5 325,507 + Shewana3_0293 0.16 -1.7 325,608 + Shewana3_0293 0.24 +0.9 325,636 - Shewana3_0293 0.26 -0.0 325,674 + Shewana3_0293 0.29 +1.1 325,682 - Shewana3_0293 0.29 +0.1 325,682 - Shewana3_0293 0.29 -0.9 325,717 + Shewana3_0293 0.32 +0.7 325,725 - Shewana3_0293 0.32 +0.3 325,958 + Shewana3_0293 0.50 +0.0 326,037 - Shewana3_0293 0.56 +0.5 326,066 - Shewana3_0293 0.58 -1.7 326,146 - Shewana3_0293 0.64 +2.0 326,309 - Shewana3_0293 0.76 +0.5 326,340 + Shewana3_0293 0.78 -1.1 326,509 - +1.1 326,527 - -3.5 326,573 - -1.4 326,677 - -0.2 326,929 + +1.0 326,945 - +0.7 327,008 - -0.4 327,008 - -2.1 327,085 - Shewana3_0294 0.14 +1.0 327,087 + Shewana3_0294 0.14 +0.5 327,124 + Shewana3_0294 0.18 +0.3 327,124 + Shewana3_0294 0.18 +0.1 327,132 - Shewana3_0294 0.18 -2.8 327,134 + Shewana3_0294 0.18 +1.8 327,165 + Shewana3_0294 0.21 -0.6 327,165 + Shewana3_0294 0.21 +0.5 327,165 + Shewana3_0294 0.21 +0.2 327,165 + Shewana3_0294 0.21 -1.5 327,165 + Shewana3_0294 0.21 +0.5 327,165 + Shewana3_0294 0.21 +0.1 327,173 - Shewana3_0294 0.22 -1.4 327,601 + Shewana3_0294 0.58 -1.5 327,609 - Shewana3_0294 0.59 -0.7
Or see this region's nucleotide sequence