Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0279

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0277 and Shewana3_0278 are separated by 39 nucleotidesShewana3_0278 and Shewana3_0279 are separated by 8 nucleotidesShewana3_0279 and Shewana3_0280 overlap by 20 nucleotides Shewana3_0277: Shewana3_0277 - molybdopterin synthase subunit MoaE (RefSeq), at 311,643 to 312,110 _0277 Shewana3_0278: Shewana3_0278 - molybdenum ABC transporter, periplasmic molybdate-binding protein (RefSeq), at 312,150 to 312,953 _0278 Shewana3_0279: Shewana3_0279 - molybdate ABC transporter, inner membrane subunit (RefSeq), at 312,962 to 313,642 _0279 Shewana3_0280: Shewana3_0280 - ABC transporter related (RefSeq), at 313,623 to 314,726 _0280 Position (kb) 312 313 314Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 312.041 kb on + strand, within Shewana3_0277at 312.105 kb on + strandat 312.214 kb on + strandat 312.222 kb on - strandat 312.252 kb on - strand, within Shewana3_0278at 312.283 kb on + strand, within Shewana3_0278at 312.519 kb on + strand, within Shewana3_0278at 312.527 kb on - strand, within Shewana3_0278at 312.606 kb on - strand, within Shewana3_0278at 312.606 kb on - strand, within Shewana3_0278at 312.783 kb on + strand, within Shewana3_0278at 312.797 kb on - strand, within Shewana3_0278at 312.939 kb on - strandat 312.954 kb on + strandat 312.954 kb on + strandat 313.078 kb on + strand, within Shewana3_0279at 313.078 kb on + strand, within Shewana3_0279at 313.085 kb on + strand, within Shewana3_0279at 313.086 kb on - strand, within Shewana3_0279at 313.086 kb on - strand, within Shewana3_0279at 313.086 kb on - strand, within Shewana3_0279at 313.086 kb on - strand, within Shewana3_0279at 313.178 kb on - strand, within Shewana3_0279at 313.302 kb on + strand, within Shewana3_0279at 313.302 kb on + strand, within Shewana3_0279at 313.435 kb on + strand, within Shewana3_0279at 313.511 kb on + strand, within Shewana3_0279at 313.553 kb on + strand, within Shewana3_0279at 313.621 kb on + strandat 313.680 kb on - strandat 313.798 kb on + strand, within Shewana3_0280at 313.798 kb on + strand, within Shewana3_0280at 313.798 kb on + strand, within Shewana3_0280at 313.806 kb on - strand, within Shewana3_0280at 313.984 kb on + strand, within Shewana3_0280at 313.992 kb on - strand, within Shewana3_0280at 313.992 kb on - strand, within Shewana3_0280at 313.992 kb on - strand, within Shewana3_0280at 314.025 kb on + strand, within Shewana3_0280at 314.041 kb on - strand, within Shewana3_0280at 314.181 kb on + strand, within Shewana3_0280at 314.372 kb on - strand, within Shewana3_0280at 314.568 kb on - strand, within Shewana3_0280

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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312,041 + Shewana3_0277 0.85 -1.0
312,105 + +0.9
312,214 + -1.0
312,222 - -0.8
312,252 - Shewana3_0278 0.13 +0.5
312,283 + Shewana3_0278 0.17 +0.9
312,519 + Shewana3_0278 0.46 -0.9
312,527 - Shewana3_0278 0.47 -3.6
312,606 - Shewana3_0278 0.57 +0.4
312,606 - Shewana3_0278 0.57 +0.5
312,783 + Shewana3_0278 0.79 -0.3
312,797 - Shewana3_0278 0.80 -0.4
312,939 - +0.5
312,954 + +0.2
312,954 + +0.6
313,078 + Shewana3_0279 0.17 +0.6
313,078 + Shewana3_0279 0.17 -0.3
313,085 + Shewana3_0279 0.18 +0.4
313,086 - Shewana3_0279 0.18 -0.9
313,086 - Shewana3_0279 0.18 -0.8
313,086 - Shewana3_0279 0.18 -3.5
313,086 - Shewana3_0279 0.18 +0.3
313,178 - Shewana3_0279 0.32 +1.8
313,302 + Shewana3_0279 0.50 -1.8
313,302 + Shewana3_0279 0.50 +0.0
313,435 + Shewana3_0279 0.69 -1.4
313,511 + Shewana3_0279 0.81 -1.9
313,553 + Shewana3_0279 0.87 -1.3
313,621 + -1.4
313,680 - +0.7
313,798 + Shewana3_0280 0.16 -1.1
313,798 + Shewana3_0280 0.16 +0.9
313,798 + Shewana3_0280 0.16 +1.1
313,806 - Shewana3_0280 0.17 -0.3
313,984 + Shewana3_0280 0.33 -0.0
313,992 - Shewana3_0280 0.33 -1.0
313,992 - Shewana3_0280 0.33 -0.0
313,992 - Shewana3_0280 0.33 +0.7
314,025 + Shewana3_0280 0.36 +2.4
314,041 - Shewana3_0280 0.38 -0.5
314,181 + Shewana3_0280 0.51 +0.5
314,372 - Shewana3_0280 0.68 +0.5
314,568 - Shewana3_0280 0.86 -0.4

Or see this region's nucleotide sequence