Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0135 and Shewana3_0136 are separated by 22 nucleotides Shewana3_0136 and Shewana3_0137 are separated by 318 nucleotides Shewana3_0137 and Shewana3_0138 are separated by 647 nucleotides
Shewana3_0135: Shewana3_0135 - oligopeptidase B (RefSeq), at 153,400 to 155,535
_0135
Shewana3_0136: Shewana3_0136 - excinuclease ABC subunit C (RefSeq), at 155,558 to 155,980
_0136
Shewana3_0137: Shewana3_0137 - hypothetical protein (RefSeq), at 156,299 to 157,129
_0137
Shewana3_0138: Shewana3_0138 - putative lipoprotein (RefSeq), at 157,777 to 158,553
_0138
Position (kb)
156
157
158 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 155.350 kb on - strand at 155.507 kb on + strand at 155.515 kb on - strand at 155.761 kb on + strand, within Shewana3_0136 at 155.761 kb on + strand, within Shewana3_0136 at 155.769 kb on - strand, within Shewana3_0136 at 155.769 kb on - strand, within Shewana3_0136 at 155.796 kb on + strand, within Shewana3_0136 at 155.829 kb on - strand, within Shewana3_0136 at 155.908 kb on - strand, within Shewana3_0136 at 156.069 kb on + strand at 156.126 kb on - strand at 156.316 kb on - strand at 156.600 kb on + strand, within Shewana3_0137 at 156.600 kb on + strand, within Shewana3_0137 at 156.618 kb on + strand, within Shewana3_0137 at 156.618 kb on + strand, within Shewana3_0137 at 156.633 kb on - strand, within Shewana3_0137 at 156.744 kb on + strand, within Shewana3_0137 at 156.761 kb on - strand, within Shewana3_0137 at 156.851 kb on - strand, within Shewana3_0137 at 156.969 kb on - strand, within Shewana3_0137 at 157.123 kb on + strand at 157.149 kb on + strand at 157.241 kb on + strand at 157.459 kb on + strand at 157.512 kb on + strand at 157.697 kb on - strand at 157.697 kb on - strand at 157.752 kb on + strand at 157.782 kb on - strand at 157.844 kb on + strand at 157.852 kb on - strand at 157.856 kb on + strand, within Shewana3_0138
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 155,350 - -0.9 155,507 + +0.6 155,515 - +0.4 155,761 + Shewana3_0136 0.48 +0.6 155,761 + Shewana3_0136 0.48 -0.1 155,769 - Shewana3_0136 0.50 +0.4 155,769 - Shewana3_0136 0.50 +0.7 155,796 + Shewana3_0136 0.56 -2.2 155,829 - Shewana3_0136 0.64 +0.4 155,908 - Shewana3_0136 0.83 +1.3 156,069 + -0.7 156,126 - -0.7 156,316 - +0.3 156,600 + Shewana3_0137 0.36 -0.9 156,600 + Shewana3_0137 0.36 +0.4 156,618 + Shewana3_0137 0.38 +0.0 156,618 + Shewana3_0137 0.38 +0.3 156,633 - Shewana3_0137 0.40 -1.3 156,744 + Shewana3_0137 0.54 +0.6 156,761 - Shewana3_0137 0.56 -0.7 156,851 - Shewana3_0137 0.66 -0.9 156,969 - Shewana3_0137 0.81 -0.9 157,123 + +0.3 157,149 + +0.4 157,241 + +0.0 157,459 + +2.8 157,512 + -0.4 157,697 - -0.7 157,697 - +0.9 157,752 + -1.2 157,782 - +0.8 157,844 + -0.9 157,852 - -0.7 157,856 + Shewana3_0138 0.10 +1.0
Or see this region's nucleotide sequence