Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0076 and Shewana3_0077 are separated by 92 nucleotides Shewana3_0077 and Shewana3_0078 are separated by 46 nucleotides Shewana3_0078 and Shewana3_0079 overlap by 4 nucleotides
Shewana3_0076: Shewana3_0076 - TAP domain-containing protein (RefSeq), at 88,057 to 89,676
_0076
Shewana3_0077: Shewana3_0077 - GntR family transcriptional regulator (RefSeq), at 89,769 to 90,134
_0077
Shewana3_0078: Shewana3_0078 - ABC transporter related (RefSeq), at 90,181 to 91,044
_0078
Shewana3_0079: Shewana3_0079 - hypothetical protein (RefSeq), at 91,041 to 92,351
_0079
Position (kb) 90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 89.216 kb on - strand, within Shewana3_0076 at 89.299 kb on + strand, within Shewana3_0076 at 89.307 kb on - strand, within Shewana3_0076 at 89.423 kb on - strand, within Shewana3_0076 at 89.458 kb on + strand, within Shewana3_0076 at 89.472 kb on + strand, within Shewana3_0076 at 89.500 kb on - strand, within Shewana3_0076 at 89.661 kb on - strand at 89.828 kb on - strand, within Shewana3_0077 at 89.885 kb on - strand, within Shewana3_0077 at 89.968 kb on + strand, within Shewana3_0077 at 90.425 kb on - strand, within Shewana3_0078 at 90.454 kb on - strand, within Shewana3_0078 at 90.569 kb on + strand, within Shewana3_0078 at 90.569 kb on + strand, within Shewana3_0078 at 90.589 kb on + strand, within Shewana3_0078 at 90.602 kb on + strand, within Shewana3_0078 at 90.610 kb on - strand, within Shewana3_0078 at 90.612 kb on + strand, within Shewana3_0078 at 90.625 kb on + strand, within Shewana3_0078 at 90.677 kb on - strand, within Shewana3_0078 at 91.001 kb on - strand at 91.040 kb on + strand at 91.055 kb on + strand at 91.084 kb on + strand at 91.246 kb on + strand, within Shewana3_0079 at 91.254 kb on - strand, within Shewana3_0079 at 91.372 kb on + strand, within Shewana3_0079 at 91.372 kb on + strand, within Shewana3_0079 at 91.372 kb on + strand, within Shewana3_0079 at 91.394 kb on - strand, within Shewana3_0079 at 91.394 kb on - strand, within Shewana3_0079 at 91.396 kb on - strand, within Shewana3_0079 at 91.522 kb on - strand, within Shewana3_0079 at 91.578 kb on - strand, within Shewana3_0079 at 91.620 kb on + strand, within Shewana3_0079 at 91.620 kb on + strand, within Shewana3_0079 at 91.759 kb on + strand, within Shewana3_0079 at 91.759 kb on + strand, within Shewana3_0079 at 91.759 kb on + strand, within Shewana3_0079 at 91.767 kb on - strand, within Shewana3_0079 at 91.767 kb on - strand, within Shewana3_0079 at 91.927 kb on + strand, within Shewana3_0079 at 92.028 kb on + strand, within Shewana3_0079 at 92.028 kb on + strand, within Shewana3_0079
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 89,216 - Shewana3_0076 0.72 -0.2 89,299 + Shewana3_0076 0.77 +0.6 89,307 - Shewana3_0076 0.77 +0.9 89,423 - Shewana3_0076 0.84 +1.2 89,458 + Shewana3_0076 0.86 -1.1 89,472 + Shewana3_0076 0.87 -1.2 89,500 - Shewana3_0076 0.89 +0.3 89,661 - -0.0 89,828 - Shewana3_0077 0.16 -2.0 89,885 - Shewana3_0077 0.32 -1.6 89,968 + Shewana3_0077 0.54 -1.0 90,425 - Shewana3_0078 0.28 -2.0 90,454 - Shewana3_0078 0.32 -0.3 90,569 + Shewana3_0078 0.45 +0.4 90,569 + Shewana3_0078 0.45 -1.0 90,589 + Shewana3_0078 0.47 +0.4 90,602 + Shewana3_0078 0.49 +0.2 90,610 - Shewana3_0078 0.50 -0.6 90,612 + Shewana3_0078 0.50 +2.5 90,625 + Shewana3_0078 0.51 -0.3 90,677 - Shewana3_0078 0.57 -0.5 91,001 - +0.5 91,040 + -0.9 91,055 + -1.5 91,084 + +0.5 91,246 + Shewana3_0079 0.16 +0.2 91,254 - Shewana3_0079 0.16 +1.1 91,372 + Shewana3_0079 0.25 -0.9 91,372 + Shewana3_0079 0.25 -3.2 91,372 + Shewana3_0079 0.25 -0.1 91,394 - Shewana3_0079 0.27 +1.7 91,394 - Shewana3_0079 0.27 +0.5 91,396 - Shewana3_0079 0.27 +0.8 91,522 - Shewana3_0079 0.37 +1.0 91,578 - Shewana3_0079 0.41 +0.6 91,620 + Shewana3_0079 0.44 +0.4 91,620 + Shewana3_0079 0.44 -0.0 91,759 + Shewana3_0079 0.55 +0.4 91,759 + Shewana3_0079 0.55 -1.7 91,759 + Shewana3_0079 0.55 +0.4 91,767 - Shewana3_0079 0.55 -0.6 91,767 - Shewana3_0079 0.55 +0.2 91,927 + Shewana3_0079 0.68 -0.0 92,028 + Shewana3_0079 0.75 +0.8 92,028 + Shewana3_0079 0.75 +0.5
Or see this region's nucleotide sequence