Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0058 and Shewana3_0059 are separated by 44 nucleotides Shewana3_0059 and Shewana3_0060 are separated by 0 nucleotides Shewana3_0060 and Shewana3_0061 are separated by 228 nucleotides
Shewana3_0058: Shewana3_0058 - TrkA domain-containing protein (RefSeq), at 69,187 to 69,885
_0058
Shewana3_0059: Shewana3_0059 - two component transcriptional regulator (RefSeq), at 69,930 to 70,619
_0059
Shewana3_0060: Shewana3_0060 - ATPase domain-containing protein (RefSeq), at 70,620 to 71,666
_0060
Shewana3_0061: Shewana3_0061 - pirin domain-containing protein (RefSeq), at 71,895 to 72,821
_0061
Position (kb) 70
71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 69.699 kb on + strand, within Shewana3_0058 at 69.699 kb on + strand, within Shewana3_0058 at 69.860 kb on + strand at 69.907 kb on + strand at 69.927 kb on + strand at 69.927 kb on + strand at 69.927 kb on + strand at 69.935 kb on - strand at 69.935 kb on - strand at 69.935 kb on - strand at 69.935 kb on - strand at 70.150 kb on - strand, within Shewana3_0059 at 70.151 kb on - strand, within Shewana3_0059 at 70.339 kb on + strand, within Shewana3_0059 at 70.386 kb on + strand, within Shewana3_0059 at 70.399 kb on + strand, within Shewana3_0059 at 70.454 kb on + strand, within Shewana3_0059 at 70.462 kb on - strand, within Shewana3_0059 at 70.462 kb on - strand, within Shewana3_0059 at 70.649 kb on - strand at 70.673 kb on - strand at 70.733 kb on + strand, within Shewana3_0060 at 70.734 kb on + strand, within Shewana3_0060 at 70.742 kb on - strand, within Shewana3_0060 at 70.779 kb on - strand, within Shewana3_0060 at 70.779 kb on - strand, within Shewana3_0060 at 70.816 kb on - strand, within Shewana3_0060 at 70.823 kb on - strand, within Shewana3_0060 at 70.823 kb on - strand, within Shewana3_0060 at 70.828 kb on - strand, within Shewana3_0060 at 70.850 kb on + strand, within Shewana3_0060 at 70.876 kb on - strand, within Shewana3_0060 at 70.907 kb on + strand, within Shewana3_0060 at 70.915 kb on - strand, within Shewana3_0060 at 71.019 kb on - strand, within Shewana3_0060 at 71.034 kb on + strand, within Shewana3_0060 at 71.185 kb on - strand, within Shewana3_0060 at 71.495 kb on - strand, within Shewana3_0060 at 71.549 kb on - strand, within Shewana3_0060 at 71.571 kb on + strand at 71.708 kb on + strand at 71.710 kb on - strand at 71.937 kb on + strand at 71.937 kb on + strand at 72.209 kb on + strand, within Shewana3_0061 at 72.217 kb on - strand, within Shewana3_0061 at 72.276 kb on + strand, within Shewana3_0061 at 72.420 kb on - strand, within Shewana3_0061 at 72.426 kb on + strand, within Shewana3_0061 at 72.506 kb on - strand, within Shewana3_0061 at 72.551 kb on - strand, within Shewana3_0061 at 72.551 kb on - strand, within Shewana3_0061 at 72.579 kb on - strand, within Shewana3_0061 at 72.632 kb on - strand, within Shewana3_0061
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 69,699 + Shewana3_0058 0.73 +1.0 69,699 + Shewana3_0058 0.73 +0.0 69,860 + +2.1 69,907 + -0.5 69,927 + -1.7 69,927 + +0.8 69,927 + +0.3 69,935 - -1.5 69,935 - -1.4 69,935 - -1.2 69,935 - -0.9 70,150 - Shewana3_0059 0.32 -0.4 70,151 - Shewana3_0059 0.32 +0.8 70,339 + Shewana3_0059 0.59 -0.2 70,386 + Shewana3_0059 0.66 +1.0 70,399 + Shewana3_0059 0.68 +1.2 70,454 + Shewana3_0059 0.76 +0.3 70,462 - Shewana3_0059 0.77 +0.9 70,462 - Shewana3_0059 0.77 -1.6 70,649 - -0.8 70,673 - -0.6 70,733 + Shewana3_0060 0.11 -0.1 70,734 + Shewana3_0060 0.11 -0.1 70,742 - Shewana3_0060 0.12 +2.7 70,779 - Shewana3_0060 0.15 +1.6 70,779 - Shewana3_0060 0.15 +0.5 70,816 - Shewana3_0060 0.19 -1.4 70,823 - Shewana3_0060 0.19 -1.2 70,823 - Shewana3_0060 0.19 -1.1 70,828 - Shewana3_0060 0.20 -2.2 70,850 + Shewana3_0060 0.22 -1.5 70,876 - Shewana3_0060 0.24 +0.5 70,907 + Shewana3_0060 0.27 +0.4 70,915 - Shewana3_0060 0.28 +0.3 71,019 - Shewana3_0060 0.38 -0.6 71,034 + Shewana3_0060 0.40 -0.2 71,185 - Shewana3_0060 0.54 -1.2 71,495 - Shewana3_0060 0.84 -0.8 71,549 - Shewana3_0060 0.89 +0.8 71,571 + +0.6 71,708 + +0.8 71,710 - +0.4 71,937 + -2.9 71,937 + -0.7 72,209 + Shewana3_0061 0.34 -1.0 72,217 - Shewana3_0061 0.35 +0.9 72,276 + Shewana3_0061 0.41 -0.9 72,420 - Shewana3_0061 0.57 -1.1 72,426 + Shewana3_0061 0.57 +0.1 72,506 - Shewana3_0061 0.66 +0.3 72,551 - Shewana3_0061 0.71 +0.4 72,551 - Shewana3_0061 0.71 +0.5 72,579 - Shewana3_0061 0.74 +1.5 72,632 - Shewana3_0061 0.80 +0.6
Or see this region's nucleotide sequence