Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0042

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0040 and Shewana3_0041 are separated by 29 nucleotidesShewana3_0041 and Shewana3_0042 are separated by 30 nucleotidesShewana3_0042 and aroE are separated by 170 nucleotides Shewana3_0040: Shewana3_0040 - translation factor SUA5 (RefSeq), at 46,495 to 47,061 _0040 Shewana3_0041: Shewana3_0041 - coproporphyrinogen III oxidase (RefSeq), at 47,091 to 47,999 _0041 Shewana3_0042: Shewana3_0042 - globin (RefSeq), at 48,030 to 48,467 _0042 Shewana3_0043: aroE - shikimate 5-dehydrogenase (RefSeq), at 48,638 to 49,516 aroE Position (kb) 48 49Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 47.079 kb on + strandat 47.166 kb on - strandat 47.241 kb on - strand, within Shewana3_0041at 47.256 kb on + strand, within Shewana3_0041at 47.300 kb on + strand, within Shewana3_0041at 48.161 kb on - strand, within Shewana3_0042at 48.237 kb on - strand, within Shewana3_0042at 48.252 kb on - strand, within Shewana3_0042at 48.292 kb on - strand, within Shewana3_0042at 48.415 kb on + strand, within Shewana3_0042at 48.568 kb on + strandat 48.576 kb on - strandat 48.612 kb on - strandat 48.726 kb on + strand, within aroEat 48.742 kb on - strand, within aroEat 48.752 kb on - strand, within aroEat 48.834 kb on - strand, within aroEat 48.858 kb on + strand, within aroEat 48.873 kb on + strand, within aroEat 48.873 kb on + strand, within aroEat 48.881 kb on - strand, within aroEat 48.881 kb on - strand, within aroEat 48.922 kb on + strand, within aroEat 48.922 kb on + strand, within aroEat 48.929 kb on + strand, within aroEat 48.937 kb on - strand, within aroEat 49.009 kb on + strand, within aroEat 49.084 kb on + strand, within aroEat 49.123 kb on + strand, within aroEat 49.136 kb on + strand, within aroEat 49.136 kb on + strand, within aroEat 49.410 kb on - strand, within aroEat 49.410 kb on - strand, within aroEat 49.462 kb on + strandat 49.464 kb on + strandat 49.464 kb on + strandat 49.464 kb on + strandat 49.464 kb on + strandat 49.464 kb on + strandat 49.464 kb on + strandat 49.464 kb on + strandat 49.464 kb on + strandat 49.464 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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47,079 + -1.4
47,166 - -1.3
47,241 - Shewana3_0041 0.17 -2.3
47,256 + Shewana3_0041 0.18 +0.0
47,300 + Shewana3_0041 0.23 -0.1
48,161 - Shewana3_0042 0.30 +0.4
48,237 - Shewana3_0042 0.47 -1.1
48,252 - Shewana3_0042 0.51 +0.7
48,292 - Shewana3_0042 0.60 -1.2
48,415 + Shewana3_0042 0.88 -1.1
48,568 + +1.8
48,576 - +0.8
48,612 - -3.1
48,726 + aroE Shewana3_0043 0.10 -4.8
48,742 - aroE Shewana3_0043 0.12 -3.0
48,752 - aroE Shewana3_0043 0.13 -1.0
48,834 - aroE Shewana3_0043 0.22 -4.9
48,858 + aroE Shewana3_0043 0.25 -1.4
48,873 + aroE Shewana3_0043 0.27 -4.6
48,873 + aroE Shewana3_0043 0.27 -2.0
48,881 - aroE Shewana3_0043 0.28 -3.2
48,881 - aroE Shewana3_0043 0.28 -5.9
48,922 + aroE Shewana3_0043 0.32 -3.3
48,922 + aroE Shewana3_0043 0.32 -1.6
48,929 + aroE Shewana3_0043 0.33 -4.4
48,937 - aroE Shewana3_0043 0.34 -3.6
49,009 + aroE Shewana3_0043 0.42 -3.3
49,084 + aroE Shewana3_0043 0.51 -4.7
49,123 + aroE Shewana3_0043 0.55 -2.0
49,136 + aroE Shewana3_0043 0.57 -3.0
49,136 + aroE Shewana3_0043 0.57 -1.7
49,410 - aroE Shewana3_0043 0.88 -3.1
49,410 - aroE Shewana3_0043 0.88 -1.7
49,462 + -3.8
49,464 + -4.7
49,464 + -3.8
49,464 + -4.8
49,464 + -1.2
49,464 + -3.0
49,464 + -4.2
49,464 + -5.4
49,464 + -4.5
49,464 + -4.2

Or see this region's nucleotide sequence