Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4366 and Shewana3_4367 are separated by 157 nucleotides Shewana3_4367 and Shewana3_4368 are separated by 205 nucleotides
Shewana3_4366: Shewana3_4366 - chromate resistance exported protein (RefSeq), at 254,610 to 255,548
_4366
Shewana3_4367: Shewana3_4367 - phage integrase family protein (RefSeq), at 255,706 to 256,713
_4367
Shewana3_4368: Shewana3_4368 - chromosome segregation ATPases-like protein (RefSeq), at 256,919 to 257,974
_4368
Position (kb) 255
256
257 Strain fitness (log2 ratio) -2
-1
0
1
2 at 254.857 kb on + strand, within Shewana3_4366 at 254.865 kb on - strand, within Shewana3_4366 at 254.941 kb on + strand, within Shewana3_4366 at 255.027 kb on - strand, within Shewana3_4366 at 255.081 kb on + strand, within Shewana3_4366 at 255.218 kb on + strand, within Shewana3_4366 at 255.450 kb on + strand, within Shewana3_4366 at 255.851 kb on + strand, within Shewana3_4367 at 255.851 kb on + strand, within Shewana3_4367 at 255.861 kb on + strand, within Shewana3_4367 at 255.871 kb on + strand, within Shewana3_4367 at 255.879 kb on - strand, within Shewana3_4367 at 256.105 kb on - strand, within Shewana3_4367 at 256.141 kb on - strand, within Shewana3_4367 at 256.191 kb on + strand, within Shewana3_4367 at 256.339 kb on - strand, within Shewana3_4367 at 256.351 kb on - strand, within Shewana3_4367 at 256.421 kb on + strand, within Shewana3_4367 at 256.485 kb on - strand, within Shewana3_4367 at 256.485 kb on - strand, within Shewana3_4367 at 256.581 kb on - strand, within Shewana3_4367 at 256.634 kb on + strand at 256.949 kb on - strand at 257.076 kb on + strand, within Shewana3_4368 at 257.344 kb on + strand, within Shewana3_4368 at 257.471 kb on - strand, within Shewana3_4368
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 254,857 + Shewana3_4366 0.26 -0.1 254,865 - Shewana3_4366 0.27 +1.6 254,941 + Shewana3_4366 0.35 +1.8 255,027 - Shewana3_4366 0.44 -0.6 255,081 + Shewana3_4366 0.50 +0.4 255,218 + Shewana3_4366 0.65 -0.3 255,450 + Shewana3_4366 0.89 -1.2 255,851 + Shewana3_4367 0.14 -1.8 255,851 + Shewana3_4367 0.14 -1.2 255,861 + Shewana3_4367 0.15 +1.2 255,871 + Shewana3_4367 0.16 -1.4 255,879 - Shewana3_4367 0.17 +0.6 256,105 - Shewana3_4367 0.40 -0.0 256,141 - Shewana3_4367 0.43 -1.0 256,191 + Shewana3_4367 0.48 +0.1 256,339 - Shewana3_4367 0.63 -0.1 256,351 - Shewana3_4367 0.64 +0.1 256,421 + Shewana3_4367 0.71 +0.4 256,485 - Shewana3_4367 0.77 -0.6 256,485 - Shewana3_4367 0.77 +0.5 256,581 - Shewana3_4367 0.87 -1.4 256,634 + +0.3 256,949 - -0.1 257,076 + Shewana3_4368 0.15 +0.5 257,344 + Shewana3_4368 0.40 +0.0 257,471 - Shewana3_4368 0.52 -0.3
Or see this region's nucleotide sequence