Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4306 and Shewana3_4307 are separated by 84 nucleotides Shewana3_4307 and Shewana3_4308 are separated by 116 nucleotides
Shewana3_4306: Shewana3_4306 - IS4 family transposase (RefSeq), at 194,552 to 195,232
_4306
Shewana3_4307: Shewana3_4307 - transposase Tn3 family protein (RefSeq), at 195,317 to 198,304
_4307
Shewana3_4308: Shewana3_4308 - hypothetical protein (RefSeq), at 198,421 to 199,047
_4308
Position (kb) 195
196
197
198
199 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 194.446 kb on + strand at 194.446 kb on - strand at 194.469 kb on - strand at 194.492 kb on + strand at 194.493 kb on - strand at 195.378 kb on - strand at 195.497 kb on + strand at 195.850 kb on + strand, within Shewana3_4307 at 195.990 kb on - strand, within Shewana3_4307 at 195.990 kb on - strand, within Shewana3_4307 at 195.993 kb on + strand, within Shewana3_4307 at 196.212 kb on + strand, within Shewana3_4307 at 196.220 kb on - strand, within Shewana3_4307 at 196.220 kb on - strand, within Shewana3_4307 at 196.432 kb on + strand, within Shewana3_4307 at 196.593 kb on + strand, within Shewana3_4307 at 196.616 kb on - strand, within Shewana3_4307 at 197.241 kb on + strand, within Shewana3_4307 at 197.249 kb on - strand, within Shewana3_4307 at 197.435 kb on + strand, within Shewana3_4307 at 197.438 kb on - strand, within Shewana3_4307 at 197.438 kb on - strand, within Shewana3_4307 at 197.505 kb on - strand, within Shewana3_4307 at 197.581 kb on - strand, within Shewana3_4307 at 197.604 kb on + strand, within Shewana3_4307 at 197.701 kb on + strand, within Shewana3_4307 at 197.901 kb on - strand, within Shewana3_4307 at 198.072 kb on + strand at 198.102 kb on - strand at 198.206 kb on + strand at 198.214 kb on - strand at 198.220 kb on + strand at 198.225 kb on + strand at 198.225 kb on + strand at 198.226 kb on + strand at 198.714 kb on - strand, within Shewana3_4308 at 198.967 kb on + strand, within Shewana3_4308 at 199.047 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 194,446 + -0.4 194,446 - +1.3 194,469 - +0.5 194,492 + -1.0 194,493 - +2.1 195,378 - +0.1 195,497 + +0.9 195,850 + Shewana3_4307 0.18 +2.6 195,990 - Shewana3_4307 0.23 -1.0 195,990 - Shewana3_4307 0.23 +0.4 195,993 + Shewana3_4307 0.23 +1.0 196,212 + Shewana3_4307 0.30 -1.7 196,220 - Shewana3_4307 0.30 +0.7 196,220 - Shewana3_4307 0.30 +1.5 196,432 + Shewana3_4307 0.37 +1.4 196,593 + Shewana3_4307 0.43 +1.4 196,616 - Shewana3_4307 0.43 -1.0 197,241 + Shewana3_4307 0.64 -1.8 197,249 - Shewana3_4307 0.65 -1.0 197,435 + Shewana3_4307 0.71 -3.8 197,438 - Shewana3_4307 0.71 -1.2 197,438 - Shewana3_4307 0.71 -0.5 197,505 - Shewana3_4307 0.73 +1.0 197,581 - Shewana3_4307 0.76 +1.3 197,604 + Shewana3_4307 0.77 -1.3 197,701 + Shewana3_4307 0.80 +0.3 197,901 - Shewana3_4307 0.86 +2.0 198,072 + +0.2 198,102 - +0.6 198,206 + -0.3 198,214 - +1.0 198,220 + +0.4 198,225 + +0.3 198,225 + -1.4 198,226 + +0.6 198,714 - Shewana3_4308 0.47 +0.3 198,967 + Shewana3_4308 0.87 -0.8 199,047 + -0.6
Or see this region's nucleotide sequence