Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4287 and Shewana3_4288 are separated by 23 nucleotides Shewana3_4288 and Shewana3_4289 are separated by 115 nucleotides Shewana3_4289 and Shewana3_4290 are separated by 14 nucleotides Shewana3_4290 and Shewana3_4291 are separated by 75 nucleotides
Shewana3_4287: Shewana3_4287 - CopA family copper resistance protein (RefSeq), at 170,147 to 172,075
_4287
Shewana3_4288: Shewana3_4288 - copper resistance B precursor (RefSeq), at 172,099 to 172,812
_4288
Shewana3_4289: Shewana3_4289 - copper resistance protein CopC (RefSeq), at 172,928 to 173,350
_4289
Shewana3_4290: Shewana3_4290 - copper resistance D domain-containing protein (RefSeq), at 173,365 to 174,261
_4290
Shewana3_4291: Shewana3_4291 - putative orphan protein (RefSeq), at 174,337 to 174,780
_4291
Position (kb) 172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 171.950 kb on + strand at 172.244 kb on + strand, within Shewana3_4288 at 172.252 kb on - strand, within Shewana3_4288 at 172.254 kb on + strand, within Shewana3_4288 at 172.262 kb on - strand, within Shewana3_4288 at 172.274 kb on - strand, within Shewana3_4288 at 172.357 kb on + strand, within Shewana3_4288 at 172.357 kb on + strand, within Shewana3_4288 at 172.515 kb on - strand, within Shewana3_4288 at 172.515 kb on - strand, within Shewana3_4288 at 172.620 kb on + strand, within Shewana3_4288 at 172.652 kb on + strand, within Shewana3_4288 at 172.696 kb on - strand, within Shewana3_4288 at 172.832 kb on + strand at 172.832 kb on + strand at 172.832 kb on + strand at 172.840 kb on - strand at 172.840 kb on - strand at 172.966 kb on + strand at 173.007 kb on + strand, within Shewana3_4289 at 173.007 kb on + strand, within Shewana3_4289 at 173.007 kb on + strand, within Shewana3_4289 at 173.010 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.060 kb on - strand, within Shewana3_4289 at 173.072 kb on + strand, within Shewana3_4289 at 173.122 kb on - strand, within Shewana3_4289 at 173.191 kb on - strand, within Shewana3_4289 at 173.279 kb on + strand, within Shewana3_4289 at 173.327 kb on + strand at 173.417 kb on + strand at 173.463 kb on + strand, within Shewana3_4290 at 173.570 kb on - strand, within Shewana3_4290 at 173.675 kb on + strand, within Shewana3_4290 at 173.763 kb on + strand, within Shewana3_4290 at 173.833 kb on - strand, within Shewana3_4290 at 173.870 kb on - strand, within Shewana3_4290 at 173.976 kb on + strand, within Shewana3_4290 at 173.995 kb on + strand, within Shewana3_4290 at 174.022 kb on + strand, within Shewana3_4290 at 174.030 kb on - strand, within Shewana3_4290 at 174.064 kb on - strand, within Shewana3_4290 at 174.092 kb on + strand, within Shewana3_4290 at 174.141 kb on + strand, within Shewana3_4290 at 174.208 kb on - strand at 174.331 kb on + strand at 174.344 kb on - strand at 174.346 kb on + strand at 174.346 kb on + strand at 174.346 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 171,950 + +0.0 172,244 + Shewana3_4288 0.20 +0.6 172,252 - Shewana3_4288 0.21 -1.5 172,254 + Shewana3_4288 0.22 -0.9 172,262 - Shewana3_4288 0.23 +1.2 172,274 - Shewana3_4288 0.25 +0.7 172,357 + Shewana3_4288 0.36 -2.3 172,357 + Shewana3_4288 0.36 +1.1 172,515 - Shewana3_4288 0.58 +0.7 172,515 - Shewana3_4288 0.58 -1.0 172,620 + Shewana3_4288 0.73 +0.5 172,652 + Shewana3_4288 0.77 -0.7 172,696 - Shewana3_4288 0.84 +0.4 172,832 + +0.5 172,832 + -2.2 172,832 + -1.0 172,840 - +0.5 172,840 - +2.4 172,966 + +0.0 173,007 + Shewana3_4289 0.19 -0.7 173,007 + Shewana3_4289 0.19 +0.6 173,007 + Shewana3_4289 0.19 -1.7 173,010 - Shewana3_4289 0.19 +0.9 173,015 - Shewana3_4289 0.21 +2.7 173,015 - Shewana3_4289 0.21 +1.4 173,015 - Shewana3_4289 0.21 +1.4 173,060 - Shewana3_4289 0.31 +0.8 173,072 + Shewana3_4289 0.34 -0.6 173,122 - Shewana3_4289 0.46 -0.7 173,191 - Shewana3_4289 0.62 -0.3 173,279 + Shewana3_4289 0.83 +0.8 173,327 + -0.5 173,417 + +0.6 173,463 + Shewana3_4290 0.11 -1.0 173,570 - Shewana3_4290 0.23 -0.9 173,675 + Shewana3_4290 0.35 +0.3 173,763 + Shewana3_4290 0.44 -0.8 173,833 - Shewana3_4290 0.52 +1.4 173,870 - Shewana3_4290 0.56 +1.7 173,976 + Shewana3_4290 0.68 -0.7 173,995 + Shewana3_4290 0.70 -3.2 174,022 + Shewana3_4290 0.73 +0.4 174,030 - Shewana3_4290 0.74 +1.3 174,064 - Shewana3_4290 0.78 +0.5 174,092 + Shewana3_4290 0.81 +0.1 174,141 + Shewana3_4290 0.87 -0.4 174,208 - -0.6 174,331 + +0.0 174,344 - +0.2 174,346 + -1.3 174,346 + -0.2 174,346 + +1.9
Or see this region's nucleotide sequence