Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4285 and Shewana3_4286 are separated by 136 nucleotides Shewana3_4286 and Shewana3_4287 overlap by 4 nucleotides Shewana3_4287 and Shewana3_4288 are separated by 23 nucleotides Shewana3_4288 and Shewana3_4289 are separated by 115 nucleotides
Shewana3_4285: Shewana3_4285 - hypothetical protein (RefSeq), at 169,058 to 169,498
_4285
Shewana3_4286: Shewana3_4286 - hypothetical protein (RefSeq), at 169,635 to 170,150
_4286
Shewana3_4287: Shewana3_4287 - CopA family copper resistance protein (RefSeq), at 170,147 to 172,075
_4287
Shewana3_4288: Shewana3_4288 - copper resistance B precursor (RefSeq), at 172,099 to 172,812
_4288
Shewana3_4289: Shewana3_4289 - copper resistance protein CopC (RefSeq), at 172,928 to 173,350
_4289
Position (kb) 170
171
172
173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 169.276 kb on + strand, within Shewana3_4285 at 169.644 kb on + strand at 169.752 kb on - strand, within Shewana3_4286 at 169.789 kb on + strand, within Shewana3_4286 at 169.864 kb on + strand, within Shewana3_4286 at 169.874 kb on + strand, within Shewana3_4286 at 170.128 kb on + strand at 170.136 kb on - strand at 170.222 kb on + strand at 170.533 kb on - strand, within Shewana3_4287 at 170.698 kb on - strand, within Shewana3_4287 at 170.704 kb on - strand, within Shewana3_4287 at 170.984 kb on + strand, within Shewana3_4287 at 170.985 kb on + strand, within Shewana3_4287 at 170.996 kb on + strand, within Shewana3_4287 at 171.330 kb on + strand, within Shewana3_4287 at 171.338 kb on - strand, within Shewana3_4287 at 171.515 kb on + strand, within Shewana3_4287 at 171.709 kb on - strand, within Shewana3_4287 at 171.812 kb on + strand, within Shewana3_4287 at 171.879 kb on - strand, within Shewana3_4287 at 171.950 kb on + strand at 172.244 kb on + strand, within Shewana3_4288 at 172.252 kb on - strand, within Shewana3_4288 at 172.254 kb on + strand, within Shewana3_4288 at 172.262 kb on - strand, within Shewana3_4288 at 172.274 kb on - strand, within Shewana3_4288 at 172.357 kb on + strand, within Shewana3_4288 at 172.357 kb on + strand, within Shewana3_4288 at 172.515 kb on - strand, within Shewana3_4288 at 172.515 kb on - strand, within Shewana3_4288 at 172.620 kb on + strand, within Shewana3_4288 at 172.652 kb on + strand, within Shewana3_4288 at 172.696 kb on - strand, within Shewana3_4288 at 172.832 kb on + strand at 172.832 kb on + strand at 172.832 kb on + strand at 172.840 kb on - strand at 172.840 kb on - strand at 172.966 kb on + strand at 173.007 kb on + strand, within Shewana3_4289 at 173.007 kb on + strand, within Shewana3_4289 at 173.007 kb on + strand, within Shewana3_4289 at 173.010 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.060 kb on - strand, within Shewana3_4289 at 173.072 kb on + strand, within Shewana3_4289
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 169,276 + Shewana3_4285 0.49 +0.7 169,644 + -0.2 169,752 - Shewana3_4286 0.23 -2.3 169,789 + Shewana3_4286 0.30 +1.1 169,864 + Shewana3_4286 0.44 +0.7 169,874 + Shewana3_4286 0.46 -0.1 170,128 + +0.3 170,136 - +0.7 170,222 + -1.0 170,533 - Shewana3_4287 0.20 -1.0 170,698 - Shewana3_4287 0.29 +1.4 170,704 - Shewana3_4287 0.29 -1.2 170,984 + Shewana3_4287 0.43 +0.4 170,985 + Shewana3_4287 0.43 +1.1 170,996 + Shewana3_4287 0.44 +0.4 171,330 + Shewana3_4287 0.61 -0.9 171,338 - Shewana3_4287 0.62 +1.6 171,515 + Shewana3_4287 0.71 +0.7 171,709 - Shewana3_4287 0.81 +0.5 171,812 + Shewana3_4287 0.86 -0.8 171,879 - Shewana3_4287 0.90 +0.8 171,950 + +0.0 172,244 + Shewana3_4288 0.20 +0.6 172,252 - Shewana3_4288 0.21 -1.5 172,254 + Shewana3_4288 0.22 -0.9 172,262 - Shewana3_4288 0.23 +1.2 172,274 - Shewana3_4288 0.25 +0.7 172,357 + Shewana3_4288 0.36 -2.3 172,357 + Shewana3_4288 0.36 +1.1 172,515 - Shewana3_4288 0.58 +0.7 172,515 - Shewana3_4288 0.58 -1.0 172,620 + Shewana3_4288 0.73 +0.5 172,652 + Shewana3_4288 0.77 -0.7 172,696 - Shewana3_4288 0.84 +0.4 172,832 + +0.5 172,832 + -2.2 172,832 + -1.0 172,840 - +0.5 172,840 - +2.4 172,966 + +0.0 173,007 + Shewana3_4289 0.19 -0.7 173,007 + Shewana3_4289 0.19 +0.6 173,007 + Shewana3_4289 0.19 -1.7 173,010 - Shewana3_4289 0.19 +0.9 173,015 - Shewana3_4289 0.21 +2.7 173,015 - Shewana3_4289 0.21 +1.4 173,015 - Shewana3_4289 0.21 +1.4 173,060 - Shewana3_4289 0.31 +0.8 173,072 + Shewana3_4289 0.34 -0.6
Or see this region's nucleotide sequence