Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4266

Experiment: Glycine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_4265 and Shewana3_4266 overlap by 1 nucleotidesShewana3_4266 and Shewana3_4267 are separated by 9 nucleotides Shewana3_4265: Shewana3_4265 - relaxase (RefSeq), at 141,356 to 144,181 _4265 Shewana3_4266: Shewana3_4266 - hypothetical protein (RefSeq), at 144,181 to 144,900 _4266 Shewana3_4267: Shewana3_4267 - hypothetical protein (RefSeq), at 144,910 to 145,329 _4267 Position (kb) 144 145Strain fitness (log2 ratio) -2 -1 0 1 2at 143.376 kb on - strand, within Shewana3_4265at 143.450 kb on + strand, within Shewana3_4265at 143.468 kb on - strand, within Shewana3_4265at 143.473 kb on - strand, within Shewana3_4265at 143.511 kb on - strand, within Shewana3_4265at 143.548 kb on + strand, within Shewana3_4265at 143.548 kb on + strand, within Shewana3_4265at 143.654 kb on - strand, within Shewana3_4265at 143.724 kb on - strand, within Shewana3_4265at 143.761 kb on + strand, within Shewana3_4265at 143.769 kb on - strand, within Shewana3_4265at 143.769 kb on - strand, within Shewana3_4265at 143.793 kb on + strand, within Shewana3_4265at 143.822 kb on + strand, within Shewana3_4265at 143.930 kb on + strandat 143.948 kb on - strandat 144.380 kb on + strand, within Shewana3_4266at 144.395 kb on - strand, within Shewana3_4266at 144.540 kb on + strand, within Shewana3_4266at 144.584 kb on + strand, within Shewana3_4266at 144.591 kb on + strand, within Shewana3_4266at 144.620 kb on + strand, within Shewana3_4266at 144.650 kb on + strand, within Shewana3_4266at 144.823 kb on + strand, within Shewana3_4266at 144.828 kb on + strand, within Shewana3_4266at 144.889 kb on + strandat 144.972 kb on - strand, within Shewana3_4267at 145.099 kb on - strand, within Shewana3_4267at 145.124 kb on + strand, within Shewana3_4267at 145.201 kb on - strand, within Shewana3_4267at 145.239 kb on - strand, within Shewana3_4267at 145.273 kb on - strand, within Shewana3_4267at 145.393 kb on - strandat 145.811 kb on + strandat 145.819 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
remove
143,376 - Shewana3_4265 0.71 -0.0
143,450 + Shewana3_4265 0.74 -1.6
143,468 - Shewana3_4265 0.75 +0.6
143,473 - Shewana3_4265 0.75 +0.8
143,511 - Shewana3_4265 0.76 -0.7
143,548 + Shewana3_4265 0.78 +0.1
143,548 + Shewana3_4265 0.78 +1.9
143,654 - Shewana3_4265 0.81 +0.4
143,724 - Shewana3_4265 0.84 -0.7
143,761 + Shewana3_4265 0.85 -1.0
143,769 - Shewana3_4265 0.85 +0.3
143,769 - Shewana3_4265 0.85 -1.0
143,793 + Shewana3_4265 0.86 -0.7
143,822 + Shewana3_4265 0.87 -0.4
143,930 + -1.4
143,948 - +1.7
144,380 + Shewana3_4266 0.28 -1.3
144,395 - Shewana3_4266 0.30 +0.3
144,540 + Shewana3_4266 0.50 +0.3
144,584 + Shewana3_4266 0.56 -1.0
144,591 + Shewana3_4266 0.57 -1.4
144,620 + Shewana3_4266 0.61 +0.7
144,650 + Shewana3_4266 0.65 +0.4
144,823 + Shewana3_4266 0.89 +0.4
144,828 + Shewana3_4266 0.90 -0.4
144,889 + -0.4
144,972 - Shewana3_4267 0.15 -0.8
145,099 - Shewana3_4267 0.45 +0.2
145,124 + Shewana3_4267 0.51 -0.1
145,201 - Shewana3_4267 0.69 -0.5
145,239 - Shewana3_4267 0.78 -2.1
145,273 - Shewana3_4267 0.86 -1.0
145,393 - +0.1
145,811 + +0.4
145,819 - +0.1

Or see this region's nucleotide sequence