Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4206 and Shewana3_4207 are separated by 2 nucleotides Shewana3_4207 and Shewana3_4208 are separated by 68 nucleotides
Shewana3_4206: Shewana3_4206 - hypothetical protein (RefSeq), at 71,303 to 75,577
_4206
Shewana3_4207: Shewana3_4207 - TraU family protein (RefSeq), at 75,580 to 76,659
_4207
Shewana3_4208: Shewana3_4208 - hypothetical protein (RefSeq), at 76,728 to 78,023
_4208
Position (kb)
75
76
77 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 74.733 kb on + strand, within Shewana3_4206 at 74.840 kb on + strand, within Shewana3_4206 at 74.897 kb on - strand, within Shewana3_4206 at 75.036 kb on - strand, within Shewana3_4206 at 75.148 kb on - strand, within Shewana3_4206 at 75.204 kb on - strand at 75.277 kb on - strand at 75.676 kb on - strand at 75.841 kb on - strand, within Shewana3_4207 at 75.901 kb on + strand, within Shewana3_4207 at 75.908 kb on + strand, within Shewana3_4207 at 75.916 kb on - strand, within Shewana3_4207 at 76.424 kb on - strand, within Shewana3_4207 at 76.429 kb on - strand, within Shewana3_4207 at 76.598 kb on - strand at 76.788 kb on + strand at 76.792 kb on - strand at 76.827 kb on - strand at 76.957 kb on + strand, within Shewana3_4208 at 76.965 kb on - strand, within Shewana3_4208 at 77.078 kb on - strand, within Shewana3_4208 at 77.144 kb on - strand, within Shewana3_4208 at 77.185 kb on + strand, within Shewana3_4208 at 77.315 kb on + strand, within Shewana3_4208 at 77.342 kb on - strand, within Shewana3_4208 at 77.372 kb on + strand, within Shewana3_4208 at 77.401 kb on - strand, within Shewana3_4208 at 77.402 kb on - strand, within Shewana3_4208 at 77.417 kb on + strand, within Shewana3_4208
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 74,733 + Shewana3_4206 0.80 -1.3 74,840 + Shewana3_4206 0.83 +0.4 74,897 - Shewana3_4206 0.84 +1.1 75,036 - Shewana3_4206 0.87 +0.3 75,148 - Shewana3_4206 0.90 +0.3 75,204 - +1.8 75,277 - +0.5 75,676 - -2.7 75,841 - Shewana3_4207 0.24 +1.3 75,901 + Shewana3_4207 0.30 +2.1 75,908 + Shewana3_4207 0.30 -1.6 75,916 - Shewana3_4207 0.31 +1.6 76,424 - Shewana3_4207 0.78 -0.2 76,429 - Shewana3_4207 0.79 +1.1 76,598 - -1.7 76,788 + +0.3 76,792 - +1.8 76,827 - -0.7 76,957 + Shewana3_4208 0.18 +1.1 76,965 - Shewana3_4208 0.18 -1.0 77,078 - Shewana3_4208 0.27 -1.1 77,144 - Shewana3_4208 0.32 +0.5 77,185 + Shewana3_4208 0.35 -2.6 77,315 + Shewana3_4208 0.45 -1.6 77,342 - Shewana3_4208 0.47 +1.7 77,372 + Shewana3_4208 0.50 -0.0 77,401 - Shewana3_4208 0.52 +1.6 77,402 - Shewana3_4208 0.52 -0.4 77,417 + Shewana3_4208 0.53 +1.4
Or see this region's nucleotide sequence